Gene detail

Detailed information of agem_s0944.g1.t1 in Acropora gemmifera

Genomic Location: sc0000944_pilon:1436...4345
NR annotation: XP_044166019.1, zinc finger protein 239-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0944.g1.t1

CGACAAAGCGCCGTTTAAGTTGGTCGCTTCTCCTTGTGAACCAATCGACATTCCATTTGTGTTGAGAGCAAAGTTGTCTACTAAAGATAATTCTGGGTCAATTTTCAACACATAGTGAGAGACGAGGTAAAGATAATGCCTAGATCAGCTGGAGAAAAGGAAAACTCTGAAGCCGACAACAGTGGCTATGGCATAACTCACCAAAAGTCTAGGTCACATGATGTAGAACATACATatactcaaaaggagccttttgagtgcaaacactgtggcaaatgtttccctgcatcggtaaatctcaagaaacatgaaaaaatccattctgaagaaaagaatttcaaatgtaaacagtgtggtatgtgttttagagaaggtgtgaagttaaagagacatgagaaatctcattctggagagaagccttttgattgtaaacagtgtgacaagtcattcagcagagcagaaagtcttagatcacatgaacgaattcacaatggcctgaagccatataaatgcacacagtgcgacaaatgctttagtatctcagggaatttaagaaagcatgaaagggtgcatactggagaaaaaccttatgaatgcaagcaatgtggcaagtgtttttcagtgacaggaagtctgaagagacatgaaagagttcatactggagaaaggccttatcaatgcactcactgtggcaaaagttttaatgaagcaacaaaattaaccaggcatgaaacctgtcatacagggctgaagcctcataaatgccaacagtgtggaaaatgcttttctcaggcaacaagtctgaagactcaccaaagggtgcatactggagagaagccatataagtgtaaagaatgtggaaagtgttttaattcaaccgggagtctgaagtctcacgaaagaatccacactggtgagaaaccttacaagtgcaaagaatgtggaaagtgtttcagagaagcgggaaaattaaaggtacatggaagaattcacacaggggagaaaccgtacgaatgcaaacagtgtggaaaatgttttaatcaatcaaggcatttgaaaacacatgaaatagtccacactggggaaaagccgtatgaatgcaaacaatgtggcaagtgttttaaccaagcaggaattttaaaggtgcatgagagagtccatactggtgagaaaccttatcagtgtaagcagtgtggcaaatgtttcaggcaagcaggaacattgaggacccatgaaagagttcacactgcaaagaTTCCTGAGGGCACAAGTGTTTTGGCAAGTGTTATAGTGGAACAGTTATATTGAGAAATAAGGAAAAAGTTGCAATAGGAGACAGGCCACAAGGTTTAGAGATAATCATTGAGAATGTACAGTTTTTTTTTTTATCAAAATGGTGGAATGCTCAAAAAATAATATAAAATCATAGTCCTTTGACAATATTATTACAACATACATTTTATTTTCCTATTCTGGAAGGATGTTAACATTTTAACCCTTTCACTCCCATAATTGCCACTTATTTTATATTTCATTTGAAGCTCACCAATTTTATCAGCAGTGTGAATAATCAATCAGCATCACATGACTTCATAGTTCCAAGAGAGCGAGAGTTACATATAAATTACTGGCACTACATGACAATGAGATCACTCAATCCTGACCGATAATTCACATCGCTGATGAAGTGTGAGATACTTGAACATTTCAGGTTTTTGCCCAGAGCCTTATAATATTAATTCTTTGTCAGGTAATTCAAGGTATATGTTTGTATAATTTTATGAAAAAACAGAAGATTCCACACTTTCTGTTACATTTGTGTCTGTTGTTGCCCTCTATGACTCATGGGAGTGTTTTTACCATGTGCTGGTCTGGATGCCATGTTGAGTTAATCACTCCGCAGTTGCTCTGCCGAAATTTCATTACAGTCTTTCTTTCCCTACATTCACAACACCTTCACAATGTCATTTTGTCATCTATAGTCCTTGTATTCGAAAACAAGCAAACTACATGTAAATAGCAAGAGAGAAAGATTTTATGATATCTAACTGTAAAATGCTACCAGTACTGTAACTAAACCATGGTACACTTTTTGGCCAATAGGACCAAACTTCTTATTACTATTTAATTACGCTTTTTTTTTTTTCATGTAATACATGAGAGAAAACCTTGGTCCTATTTAAGTAATGCAACTTTAACATTCTTCTATGAGGTTGGCAGATTTGGGGCAACAAAAACCAATGGCAAAAATTAATTACACTTTTGACCAATCATATAAGTGTGTGTAAATTTGTTTCAGTGAGAGATTGGTTCACAATGTGGTTTGATTAAAAGATGTTTGGATTTTACCATAAGTTCGGCAATAAATATTTAGACACAAAAAGTACAGCGGCTATCTTTCAACATAGTCTTCATCCTTCCTTTTTGCTCTGTTAATAACATCTGCTGCTCTTTGTGCAGTTTTGATGCTGCTACATCGGACCAGGGGACTGTCAGCAGGATTAGGAGAGGGAAGGGAGAGTCGCTTTTGTCCAGATACTCGCATCAGTAACTCAAGATAACACACACCAGCTGCAAATATAACAGTTCCAATTTA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF16622	zf-C2H2_11	zinc-finger C2H2-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR041697	Domain	Zinc-finger C2H2-type 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala