Gene detail

Detailed information of ahya_s0002.g177.t1 in Acropora hyacinthus

Genomic Location: sc0000002_pilon:2487325...2497942
NR annotation: XP_044172694.1, DNA-directed RNA polymerase II subunit RPB2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0002.g177.t1

GTATCAAGTATGCAAGGGAAATCCTTCAAAAGGAAATGCTGCCCCATGTTGGAGTCAGTGATTTCTGTGAGACAAAGAAAGCATACTTTTTAGGTTACATGGTTCATAGACTATTGTTGGCAGCACTTGGGAGGAGAGAACTGGATGACCGTGATCACTATGGAAACAAACGGCTTGACCTGGCAGGACCTCTGCTGGCCTTTCTCTTTAGAGGGTTATTCAGGAATCTTATGAAGGAAGTGAGAATGTATGCACAGAAGTTTATTGATAGGGGGAAGGATTTCAACATTGAATTGGCCCTCAAACCCAAGGTGATTACAGACGGGCTAAGGTACTCCCTTGCAACAGGAAACTGGGGTGATCAGAAGAAAGCTCATCAGAGCCGTGCAGGAATAAATGCTATTGCGGCGATTGCATCTTACACGGGTTACAATCAGGAAGATTCAGTTATCATGAACGCTTCAGCTATTGACAGGGGTTTGTACAGATCGGTGTTTTACCGTTCGTACCGCGATCAAGAGTCGAAGCGAGGAATGGATCAAGAAGAAACATTTGAAAAACCAACGAGGGATTCTTGCCAAGGCATGCGCAATGCAGTTTATGATAAACTGGATGATGACGGACTCATCTCTCCTGGTACGCGCGTGAGCGGTGATGACGTCATCGTTGGAAAGACAGTAACTTTACCAGAGAATGATGACGAGTTGGAGGGAACAACCCGCCGCTTTACCAAGAAAGACTCGAGCACCTTCCTTCGCCCAAGTGAAACTGGCATAGTGGATCAGGTAATGGTTACAATCAATCAAGAAGGATACAAGTTCACTAAAATCAAGGTGCGCTCAGTTCGTGTACCTCAAATAGGAGACAAGTTTGCCAGTCGACATGGTCAGAAGGGAACTTGTGGAATCACTTATCGGCAAGAGGATATGCCGTTCACCTGTGAAGGTATCACCCCTGATGTGATTATTAATCCTCACGCCATTCCCAGCCGTATGACCATTGGTCACTTGATCGAGTGTCTGCAAGGAAAGGTGTCGGCCAACAAGGGAGAGATCGGAGATGCCACGCCCTTTAACGATGCTGTGAATGTGCAGAAGGTATCTCAACTTCTTAACGACTATGGATACCATCTCCGAGGTAACGAGGTCTTGTACAATGGATTTACAGGAAGAAAGCTAAACGCTCAAGTTTTCTTGGGTCCTACTTATTACCAGCGTCTGAAGCACATGGTGGATGACAAGATCCACTCCCGAGCCAGAGGTCCAGTCCAGATCCTTACTAGGCAGCCCATGGAGGGTAGATCTCGTGATGGTGGCCTGCGTTTTGGTGAGATGGAACGTGACTGCATGATTGCACACGGGGCAGCCCAGTTTCTGAACGAGCGCTTGTTTGAGGTGTCTGATCCGTACAGTTGTCATGTCTGTAATCTCTGTGGGCTCATCGCTATCGCCAACTTACGAAACAATACTTTTGAATGCCGAGGATGCAAAAACAAGACGCAGGTGTCACGTATTCGCATGCCCTACGCCGCAAAGCTTCTCTTCCAAGAGCTGATGTCCATGAGCATTGCTCCTCGTATGATGGTGTGCGATCCAGTCAAATGAGAGACACCTATCTCAGCTTACACAAACAAACAGGATTCGTTCTCAGTCATTTTCGGTCACTTACATGCGACTCTCGTTTCCGTGAACAAACAGTCTGTCAATCGTAATCTCGTCGAAGAAGGGCCGAATGTTTCGCCATTTGGTTGGCTATCCTTAAATTTATTCATGGGTAGTTTATGTAAAAAGTTGTGTTAAGGAAATTTAATGTTATAGTGCTAAATGAAGTATTGCGTTATTCTTAAAATTGCAGGCTGTTCCTTTGTCGAATCACCAACCCCCAAAAAAGTTCAGTTCTCTTTCAAGATTTCGACGATGAAATGATTTTTCAATTCCGAGTCGAACATACCATAACATGATAGGGAAAATGACTATTCCCTTTTTCGTTGATTGGTTTATCTCCATGTACTTAGTTAAGGGTGAGAAGAGACAGGGGTTACGTCAAAATCCTAATAATAAAGGTTAAGTTAACCT

Protein

Uniprot

Uniprot term	Description
A5PJW8	DNA-directed RNA polymerase II subunit RPB2 OS=Bos taurus OX=9913 GN=POLR2B PE=1 SV=1
P30876	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1
Q8CFI7	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04560	RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	Domain	Interproscan
PF00562	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04561	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007641	Domain	RNA polymerase Rpb2, domain 7	Interproscan
IPR015712	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR007121	Conserved_site	RNA polymerase, beta subunit, conserved site	Interproscan
IPR007120	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR037033	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR014724	Homologous_superfamily	RNA polymerase Rpb2, OB-fold	Interproscan
IPR037034	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan
IPR007642	Domain	RNA polymerase Rpb2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003899	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0001055	Molecular Function	RNA polymerase II activity	Interproscan
GO:0005665	Cellular Component	RNA polymerase II, core complex	Interproscan
GO:0032549	Molecular Function	ribonucleoside binding	Interproscan