Gene detail

Detailed information of ahya_s0003.g246.t2 in Acropora hyacinthus

Genomic Location: sc0000003_pilon:3422126...3438958
NR annotation: XP_044174169.1, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0003.g246.t2

TATTCTTTGTTTGTCTCCTTGAAGAGCCAATAACTGTTGGCAAAAGAATTACAGAAGCTAGTTATGTTCCTGTACAACAAAAGACAAGAAATTATTCCGAAACTATCATCAAGAATGACCCATCAACGATAACAACCAAACACCTGACACAGAGCTAACCAAGAACGACTTTGAAGAGTCTTGGAGACCCATCTGGGAAGATCATTAAGAAACCAACTTAGATGAAATGGATAAACGAAGTGAAAGAGGCCATCGATGAAGTTATACCACCACCCTGTGATGACTTAATAACTATACAGGAAAGTGACGaatacaaaacgaggggcgtcaagtgtggaaactgcggcaaaacaagacaacaatctgcctactgcttcacttgttgttcgttctggtgcgatgactgccttcctttccacaacgggataagaaccaataaagaacaccacgtgttggctttgaaagattttcgagatgaagactttgagaacattctcaagcaaccaccattttgtacaaaacacgagaagaaattagagttcttctgtcaggtttgtaaaacaacaatatgttattcgtgtgctgtgacagaccacgacggtcacgcaaagattgttttggaagacgctgcaaaacaacgcaagttgagaatagttagagccgttgaattcaagaaacaaaaagcgcaggacaaggtgacaagaattgccaaacttggtgaaacctgtttccaacttcaagaagaagccgaaagagtaaagagcgacatacagcagtttactgacaatctcattgcagccattgaagcgaaaaagaacgacatctttgatgaggtggaaatgaaagcaaaactgcgtctggagtttctaggagagaaaaggcaggagattcaagaagaaatgaaaagggaccaaacagcaataaaaaaaagcgatatgattttaaagcgaagcacaagcgctcaaatcatgcaaccaaatgaatttctagacgaaatatttcgggaggaaggtgagcaagaagaatcagttgaccttgacggcgagtgtgtcatagattttgtttttgaaagcaatgaagaattgtttaatgacgttcacgccagagaactgggctttttgaaaagaaaaactaacccgaaagaatcgacggttgagggaaaaggaatcagcgaaggaactgttggacttaaagccgagattgttgtcaaaacacgggacattctgggcgaacaagtctacgatcaaaataatcacgtaacaatggaaattagaaatcatgaaggacatgactgttcaacaaaaccgcaaatccacgacaacaaagatggcagctatacgatcagctactttgccaaagaaggcggaacatgtgaagcatcagtgaaagttaatgaacagcatgtgcgtggcagtccctttaaaactgaattcaaacccagactgttcaaatccgtgttattctttggaaaacaaggatcagctgaaggaatgtttgcttgggggatagcagtgaatgacaaagacgagattgcagtgactgattattataaccatcacatagaaacattcaaaagcgatggaactcacttaagatcgtttggtggagaaggtcatctgctgggacagttgaagcatcctcgtgggatagctttttgtaataacaacattatagtgtcagacactgctaaccaccgaattcaaatctttgatgatcagggtcactatcttgatcagtttggagaagagggaaaactgaatcaccagcttgaccgtcctctgggactAACCGCGACTTCAGACAATGGACAGACGAGGAGTCAGCGCTGTGCCCCATTGTTACTAGGATACGTCAAATCCTTAGAGACGTCGGCGCAGAAATTAACATCAAAATTCTTCACAGGTTGGAGAAGTATGTTTGGAAGAAATCATCACCAAACATCACCCTCCTTCAGTTTTTACGCCAGATCTTACGCTTTGGAGGTGGCTCCAAAGCCGGTTGATGGAAAAGAAGCGGGAAAGAAATGATCTTACTCCAATAACAACTTGCATTTCGCCACTTTGGAAAGACACGACAACAAACAATGTAGTTACTTTGAGAATGCCACCGCCGCAAACTCAAGTTACCTCGCTTGATACCTTCATGGCAGCTCATAGTCCGAGGCGATTTTGCCAAGCAAGGCAAAAATACATTTTAAAGCCATTAACTGTTGACAAAAGAATTACAGAGACTGGTTATGTTCCTGTACAACAAAAGACAAGAAATTATTCCGAGAATACAAGATCTACAACTGTTCATCACCAAAAACAACGTCCCGTGCTAACCCAGAGAATCCCACAAGTCAACACATCATCAAATTTTGTAACAGATAGCAGCAGTGAGGGAGAAAACAGAGTGTTAAGACTTGGGAAATGTAAACTCAACAATGAGTTTTTTTCAAAAGAGAGCTCTGCAGAACTGTATAAGAGCAGCTATTTTCGGCCGGGTCCAAAGATCCCATTTTCGTTCAGTCGCAGTACATCGATACCCACAATGCTTAATGGCGCTAGTGATCTTATTGCTATTGGAACAATACCAATGGCATCTCAGCGTCAAACACCTACAAAGCCAATGTCAAGATCCTCATCTGAAGAAGACATTCAACCTATAACCAAGTCAAAACAAGGAGCTCTGTGGAAAACAAAAGCAACTTTAAACCTCAAAGATTGTAAATACATAGATCCAATGGTTGGTGCAAGCCCAGCATTTCAGGGACGAATCACTGAAATGGCACAGCTTGAAGTAGAAACAATACGATTTGAGAAGACAAAAAGGACAAGAAAAAAAGCATCAAGTTCTTAGTGGTTTGTAATTTGATAGCTAGTTAAGGATGTTTTTTTCTTTTTAACTACTGCAAGCCGTCAGTTCAAATTTAGAGAATTTTGTTGTCACTTTTGACAAACTCCAACTTTTAAAATTTAAAATAGATTTGACGAAACAAACAGCTTGCATGGTTAAATAAGGTGAAAAGAGAAAACTGCCATTGATCTAAAATTGTGTTTTATCCTTGGCAAGCCCATGTGTAAGCTACAAAAAACACAAATGTTCAGATTGCATGCAAATTTGTAAGTATTCTGCAGTGTTTAGGTTATTGTGGTAAAGCCATAAATAGTGATATTATTCTCTCATTTAACGCATGAAATTTCATAGTGTTGAattattttattgattattattattattatGGCAAAACCATAATTTTCTTATTTAATAACTTAAGATACCATTAACAGTGGAATCCTTAGTATGCATGTTTGCTGTTAAGAAACTATTGCAAATTATTGTCGAGTTCCTTTCAGTTTCCACATGAAAATGAGGCTTATCATTGACTCGCCCACCAAAACAAGGTAGGCACCTTTATACAAAAAAAATTTTCATTTCAACTTGGCACCGAAAGCAATCCATCATTATTATACCCAAGTTTACCATTTGTTTTTTGTTGTTTCATGTAAATGAGTCAATGGGGCAATAGCAATAATTAAGTACTTGTTCGGTTGAAGAGAATTTTGTGTATTCTCTGTAATAAATTTTAAGACATGATCTTGTTCAAACCGACAGCCATTGTAATAAAAAACAATGATGATC

Protein

Uniprot

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
D2GXS7	Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca OX=9646 GN=TRIM2 PE=3 SV=1
A4IF63	Tripartite motif-containing protein 2 OS=Bos taurus OX=9913 GN=TRIM2 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR001258	Repeat	NHL repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan