Gene detail

Detailed information of ahya_s0004.g49.t2 in Acropora hyacinthus

Genomic Location: sc0000004_pilon:1774884...1782748
NR annotation: XP_029211127.2, 60S ribosomal protein L24-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0004.g49.t2

ctgagagaaaaatgaacatttgtctgagaagcaaaggttcaagggcaaatatgaaattttgagggcaatctctcagccaaggacattatcagccaacataccagcgaggggtttatttattttaaccctcccaataattttcacatcgcaatttagctgcatgaaaacattttgttgaattttttgtactttccaaaacagcatttgcaaccagcttcttaatgtcactattgctagaccccaaaaaatgagtttggtttccttccatgtaaaattggagaacaaaaaacttgaaactcttgtgctgactatgtttcttttccacggaaacaatcagaggacaaagcacgtgggggttattgcatgataactgtcctgtgagtcctcaccacatgacataaagtaaccaataaaatcgtgccaaaattaatggatgggttataaAATAATTGTGTTGTAGTGTAGGGATCTAAACTTTTGGAGAAATTGCAAAATATGGTTTTCCATCATAAGTTTTCCAAAGATGATATCAGCCAATGATTAACATCAGCATCATTACTTATGTTCAAGCAAGGAATCACTATCTTCATGACATCATTGATAaatgaatgaatttcatcatcacctttttagccccacttaagcagcagcgaggaaggcctgaaaatttcacgcctgaacagggattcgaaccctgacctctaagatgccagtgcagtgctccaccagttgagctattaggccaactgggagcaggtggttatgtgggtcaattataagcctgtagatgaggacataggtgatgataataaaggaatttttcatgtatttgaaatgcagattggaatgaatgaatttcatcatagcatgatgcttaatcaatgctaaatgtgatgatcaatgtcatttattctaatctgcatttcaaatacatgtaaaactcctgtactatcatcatctatttccacatctaggggatgtcactcttctcagttggcctgatagcagtggtagagcactgaaccgccatttcagaggtcagggtttgaatccccattcaggtctgaatttttcaggcctttctcgctgctgctcaagcagcgataaagatgcgacgatcaaattcattcattccaatccgcattccaaatacatggaaaattttctgtattatcatcatcattgagtCATATTATTCTTTGCATAAACTGAACAATCATAATTCAGTAAGTGGTGCTTTTCCGATATTCAGCTTGCTACGTTGCACTCTCTTGATGCAGGCTTTGAACAGTAGAGCTCAGAGTCTCCAAATTCTTCATTAATTTTTCTAAGTTCGCTGCGTTCTTTGTCTCGTCCTCTTCCCCACATCTTTCAGCTTTGTCGTTGAGTTCAAAATGTAATTGAGCCAAACGTTCTTGAAGTTCTCGAACCTTATCCATTTTTTCAATAGTACAGTCCTTTCCAAATGCATGCAGCTTTCCGTTATTGAAATCGTGCATGAGTTCGAGCAATCCTTTTTCCATTTGTTTCACGTCTGTTCTATCAGTCAAAAAAGAATGTTCTTGAATCTGCGGTGTGGGTTTCACCTGCGGTCTCTCGCCCTCTTTTGTTTCTTTTAACTTACTCTTACTACTGCTTGGGCCTTCCATACTCGTAGCCATCGATTCACTCTTTCCTGTATATCTGTATATTTATATAGACAAAGAAAGGCAAACTCAAGCGCTATAGTACTTTTACAACAAAAATCATTTGGGAGATTCTCTTGTGGACGCCATTATGAATTTACCCATAATGCTATATTACAGAGCTAACATAACGCATGCGCGCAACTTCGTTCTTTTCTGGAGAAATATTCATCGTTCAGCGATGAAGCTCGAGTTGTGCAATTTCAGTGGGTACAAAATTTACCCTGGCCATGGAAAAAGGTACTGCCGGCTGGACGGGAAGGTTTTCAATTTCCTTAACAAAAGATGCGAGAAAGCCCTTTTGATGCGCCGAAATCCTCGAAAGATCTCATGGACCGTCCTCTATCGTAGAAAACACAAGAAAGGTACAACAGAAGAAGTTTCAAAAAAGCGAACTAGAAGGAACGTAAAGTTCCAGAGGCCGGTTCAGGGGGCCACTTTGGAAGAGATTTTGGCAAAGAGAAATCAGAAACCTGAAGTAAGAAAAGCCTTGCGTGAACAAGCCCTCAGGGCTGCAAAGGAAAAAGCGAAGGCAAAAATACAACAAAAGAAGCTTGCCAAGGTATTTTGAAGGAGCCTTCTTGTTTGATACCCATTAAATACAATTATTATCCCAAGACGAGCAAGATAAATAATTGATGCGTTTTTGTGTCCGACGCAGGAGGCTGTAGGCTTAACCTAAGGTTTCATTTTTGCATCCATAAATTGATGTGAAAATGAACGTTCTCACTTCATTGATGCAACTTGAGGTGCTTTGCACCTGAGATTTTGCACTTGACCACTTGAGGGACGCGTGAAATAGTCTCTCTTATGTTATGTTAACGGAATTTAAAGGAAATTGTTCTCGCATATTTCGGGAGTCAACAGATAAAAGTCCAGGCCACTCTTAGACCCCTTCCGTTTGAAATTCCCGTTCTTCTTAAAGTTATCCATGTTTTGTGTCGTCCTCGCTTGCGCATGTCAACTGTTATTGTGGAGGTGAATCCTGGATGGCCACTTGAGAAAACTCGGCAAAAGTttctacttcaggctgatataaatcctgaaatttgattggctgacactaatagtgtttaagccaaatttgcagtacgtataaaaattacagtttacattgtagtaaaaaaaatgtggtttctttggagttcatggattaaataccggctggtaaaatttcaagacttccctaatatcattcaccccttgtggtgtgttagaatttgaaaaagtttcgtgcagtatttttcctagatacccctagaaacattgctctttcctatacaaTGAGATCAAAGCTGTAGTTTCGAGCGTTGGCCCTTGCTCAGTCTGAATGACCAAGGGCCAactgtcgaaaccaaaaccaaagcaattactccgatgaatcacaacag

Protein

Uniprot

Uniprot term	Description
Q9DFQ7	Large ribosomal subunit protein eL24 OS=Gillichthys mirabilis OX=8222 GN=rpl24 PE=2 SV=2
Q8JGR4	Large ribosomal subunit protein eL24 OS=Danio rerio OX=7955 GN=rpl24 PE=2 SV=1
Q6Y263	Large ribosomal subunit protein eL24 OS=Pagrus major OX=143350 GN=rpl24 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01246	Ribosomal_L24e	Ribosomal protein L24e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000988	Family	Large ribosomal subunit protein eL24-related	Interproscan
IPR023442	Conserved_site	Large ribosomal subunit protein eL24, conserved site	Interproscan
IPR011017	Domain	TRASH domain	Interproscan
IPR038630	Homologous_superfamily	Ribosomal protein L24e/L24 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10792	60S RIBOSOMAL PROTEIN L24	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002181	Biological Process	cytoplasmic translation	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0022625	Cellular Component	cytosolic large ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02896	RP-L24e, RPL24; large subunit ribosomal protein L24e	-	Ribosome	ko03011	deepkoala