Gene detail

Detailed information of ahya_s0006.g81.t1 in Acropora hyacinthus

Genomic Location: sc0000006_pilon:1211169...1238103
NR annotation: XP_044179719.1, hemicentin-1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0006.g81.t1

TCGTATCTGCGATAGAGCCGAAGCGACTACCCTAAACATAAACTCAATATGAAATTTATCGTTCGATGTTTGGCCTGGAGACTAGATGAATTAGCAATAATAATTACACTTTTTTTTTAATGTTGCCTCAAACGAATTGGAGCTTAATAATTTGTCCACATTTTTTTAGATTTTCTGACGTCCATTTCTAAGCGAACGATATCAAGTTTTGTAGCTTGTTGCTACCTCAATGGCTTCAACTTTCACTTTTGGTAGAGGAGAAATTTTTGGAGTATTCCTTCTTTTTGCCATCTGTGAGGGTGGAAATGTCATCTTCTGCAAAATACTAAACGGAAGTCTTGAGGCAAGTGAACTAGCAGTCAGTCCCAACGATGATGTTTCTCTGAACTGTTCAGTGGTTCCACAAGGAGTGCGCGCAAGTAGAGTCACGTGGACAGGAGGACAGCGTAATTACAGCAAAGATATTGTATCGGCCCCTGGCCTCTGGTCGCATTTGCGCCTAAGCAATATCAGTGTCGAAGACGCTGGCAAGTACAAATGTGAAGTATCAAACGAAGGGCATAAAGATGCCTGTGCAATAACTCTTCAAGTCAACTCTCCACCGTACATTACAAGAGCCAGCGGTTACTTCACCACTAGTCCTCAGGTTCTTTCAGTTGGGGACGTTTCTGTGTTCCACTGCTATGCTAGCGGCTGGCCTTCACCTTCACTAGTTTGGTTGAAAGATGGCAAGGAGATAAGAAATGGTGATGCTGATAACTCCTACGTGCTAAGAAAACAACCTGGAGGGCTAGACTTGACGATTTTTTATGTGAGGCAGACGGTACATGAGGGAAAGTATACGTGTGTGGCACGCAATCAGTATGGCAAGAAGCGGCATAGCATCCTCCTCTCGGTACCAGATTTTCTGGTCATGCAACCGGAAGTCCGAACATCGGTTCGTCAAGTGACAAAGCACAAGAATGAAGACGCGCTGTTGACATGCGCTGGGCAAAACACTCCAGGTGAAACCACAGTGGTCTCTTGGGCCTTCAATGGGACAGACTTGCCGCTAGAAAATGATGATGAATTTCGTCACGTTATGGACTTCGTTTATTTTGAGGAACAATCGGTTGCCAAAGTCAACTTTTCTCTCTTGATACGGAATATAACAGAACGAGACACAGGGGTTTACAGCTGTAAGGCTCTGACCCTTACTGGCGTCGATTCGGACACGATCTTTCTACGGCTTGTCACAAGTGAATTTCACAGGCCTGAAAGGCACAGTGTTTTACTAACAGCTTTACTGCTGGCAAGCGCAGGAATTCTTTGTGGCTTGGGAACAGCTATTACCGCTCATCGATTGAAGACTAAGAGAAGAAGACACGCAAAAGGTGATCTGCCGCCTACAGATTTTCAGCACGACGTCTTCATCAGTTTTAGTTCGCTCGATTATCACTGGGTACGAGATCACCTTGCTCCAGTGCTGGATAGGAAGCGAATCAATTACTGCATCCATAGCCGAGACTTTGTAGTAGGCAAAGCAATCATGGAAAACATCGCAGATAGCGTGTATAACAGCAGAAAGGTGCTGGCTGTCATTTCGAAGAATTTCATGGACAGTAGATTCTGCCGAGAGGAATTGGAAATGGCATTATATCGTTGTACGGAAATGGCGGATTCTTCGTTAATACTGATCCGTGTAGATAACGTCGATCATAAACGTCTTCCTAAAACTTTAAGAAGGCGAACGTTCATAGATTATTCATCTGCAACGGAGAGAGGTGTATGGGAAGAGCGACTGTTGAAACACATTGAATTTGAAAAGGAAGGATATTACGAGCGTGAGCCATGCCCAGTGTCCAATCTGCTACAGTTCCATGATCGTTACCTTGCCTATCTGAGGTTGGCGAAGGACCGAGATCTTTCTGGTGATCCAGAAGTCAGAGACATTTCAAGATTAACATACGAGGAAAGAAGAGCTATCATTGAGTGGGAATTTCACAGCCGAGACAAAGACAGCAATGGAATTCTCGACCAAGAAGAGATCGAGGCTATGCTAATTCCAGATGAGGACTGTATGATTGGATTCATCAAGTCATGCGACTATGATCATTATCCGGGAATCAGCAAAGTAGAATGGAACACATGTTTCCCGCCAATTGTGCCAGAATTTCTCGAAGAGGAAGTGGAGGTGTGACGGAAAAAGAGGACCTACTTCCTTTTAAATTGTGACTGAAAAGAGAATGACCAGCTGAACAAGACCTTGTATTGATTCACACCAACCTGCAATCTCGTTCCCAGAGTCCTTGGGCATTTTGGTCGTTGGTTGGGCGCCTGGAGGGACTCTGGGATTGAATGGAATTGAATCATTTTTTTCCTTGGACGTCTGCAGCTGCACAGCAATAGAAGACCGACAGGAAATCTTTCACTGACTCTATTTATAGTAAAAGAAACCCAGTTTCCTTCGCGATGACACTTTTTACTCTCTTTTATGAGACAATCACTTACTTTTGTTTAAATTTCAAGCATGTGCAGCAAGACTAAACACAACGTTTTCTGGGAAAATGGCGTCCACTATCTCAGAGTCTCCTTGGACTCTCACCCACTGACCAAAAAGCCCAGGGACTCTAGGTACGAGATTGACAAACCTCTGGCCTATGCAACAGGTGTCATAGGTTGTGGCTATTAGAACTTCTGGCACAGCGCACGATTCAtttattttctctcctctagcgtgtgtcgcgcgttgcggcacaagttctaataagcaccccctacaacacctgttatacaggTCAGCCTCATTGCTTCTATCGATCCACAATTCTTCATGATAATACGTATTGACACTAAGCCAAATAAATGTGTCTTAATGCA

Protein

Uniprot

Uniprot term	Description
Q0GC71	Toll-like receptor 2 OS=Capra hircus OX=9925 GN=TLR2 PE=2 SV=1
B2LT62	Toll-like receptor 2 OS=Capra ibex OX=72542 GN=TLR2 PE=3 SV=1
B2LT64	Toll-like receptor 2 OS=Giraffa camelopardalis OX=9894 GN=TLR2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10591	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR019577	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10075	BASIGIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030424	Cellular Component	axon	Interproscan
GO:0070593	Biological Process	dendrite self-avoidance	Interproscan
GO:0098632	Molecular Function	cell-cell adhesion mediator activity	Interproscan