Gene detail

Detailed information of ahya_s0018.g136.t2 in Acropora hyacinthus

Genomic Location: sc0000018_pilon:3270768...3288976
NR annotation: XP_029192605.2, zinc finger protein 16-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0018.g136.t2

GGAAGTTGTAATCACATTTCCCAAAGAATGAACCGGCAAGAAGGGAGGTTTCCAGACGTTCCAGATGATTCAGCTATACCTATCATCCAAGTTGCAAAGAAGACGATTTGGTTGCAGGCGAAAAAAAAAGCTCCAGAAAAAATGTTGAAAGCTTCGAGTCCAACAAGAAGCGAGCTGCCTAAAATTCAAGATTCGTCAGAGGATATGAAAATTACATTTGACAATAAAAACGACAAGAGTGAGGATAAACACAAACCGCGAGCTACAGTTGATCTCCAACAAATAGTTTCACCACAGAGAAACGCAGATCAGACATTCACTTGCAACACGTGCCACAAATTATTCTGCACGCCGCATGGTTTGGAAGTACATGTAAGGAGATCACACACTGGAATTCGTCCCTATGGGTGTAGCACGTGCGGTAAGACCTTTAGCCATTACCTCCGAAAAGTCAGATCTTTATCCCTGAAGAAAATCAAAATGCCGAGAGCTTTCCTTGTGCGCACGAAGCCCGTTGCAGCTACCAGCGAGGAATCTCCCCAGGGTTTTGGAACAGGAATCGAAGAAGGAAAGCAAAGCCAGTCCTGCAAGGTCGATGAAGTCTCTGGACCTCTCTCAACAAGTACCGGCGAAAAGGAAAACGACTCACAAGGAACTTTTAAACATGGCAGTGATTGGATCAATACCTCCGGGAGTGAGGGCGAGTGTGAAGCTGATAAGAGCGCCCTCGGTGGACAAGTGGAGATAAAAGTAAACAATGAAAAGACAAGTGAAAGAACTTACCCGACGCAAAGTAGGGATGAGAAAGTTTGCCACAAACATGAGCGGTCATTGTTTAATTCTTCAGGTTTGAGTTTGGATTCAGAGAAAAGATTTTTACCAAATTTGGCCGAGTTTAAGGAACAATGTCACAGCGACCCGTTTTGGAAAACCCCTTCCCTCCCTCTTTGGAATTGCTTTCAACAAACCCAGGGGGAAGCCAAGTCCTTCACACGCTGGATGCAACAGTGGGCACAAACGATGAGGCTCCAAACTCTTACCCCTGGGATTCCCTTTGGCGATACGCATGTGATTCCCATTGGGGACTATCAGGGGATGTATCGGCATTGCGGTGCTCTGATGCCCCAGGAAGGATGCACTAACAAGAAAAATATCGAAATAGAAGAAAAACAGTTTCCAAGGGAGAGTTTCCAAGAGGTTAACTACACCGAAGTGAACCAAGGGAAAGATCATTCCATGGGAAATGAGAGAAGACCGAGGTCGATGACGAAACAACTGTATCACTGCCAGGTCTGTGACAAAGTGTTCAATAATTCCATCAGTCTGAAGCAGCATATGATTGTGCACTCAAGCAAAAAGCCATTCCAGTGCAAATCGTGCGGCAAAAGTTTCAAGCGTTCATCCACGCTGTCTACGCACATGCTGATTCACTCAGACACGCGCCCTTTCGAATGCCATTTCTGCGGAAAGAGATTTCATCAGAAATCTGACATGAAGAAACATACCTACATCCACACGGGCGAAAAACCACACCAGTGCAGCTTCTGTGGCAAGTCATTCAGTCAGTCATCAAATCTCATCACACACTGTCGAAAGCATAAAGGTTTCAAGCCATTCTCGTGCGAGGAATGCGGCATATCGTTCATGCGCAAAGTGGACCTGAGAAGACATTTGTACACCCACGAAATGGAGGATTGAAAGGATAAAGAGAGCATTTCATTTCCTGTTCATTTGGCAAAGGCTGCCGTCAGGATCAGCGTGATGAAGTAAACTATGAAAAGTATTGTATTAAACTGCAGTAGGTTCAGTTAAATTGAAACTTTTCGGGCCGCGTAAAGAAAGGATTGACATAAAAATCTTAAAGAGTGGAGAAACAGGCGATAAAGTGGTATGGATAAATCCAGTAACATCAACAAACAAATTCCATCGGTGGTTGGAATAGATGTCATGAATCCTGAAGCATCTCCAAACGAATCCATGCAACTTGGCTTATTCTTTCCTCTATCACCTTCATTAACAATAACAACGTAATAAACTTAACAAGTTGAAACACTTTTTATTCTCCAAGTGACAACTGCAAACCCTGTTAGGGGCTTACATCCATCTTGatagatctttttagctcgtacattttgttttttcagcattacagaccacgtgatgATGGCATCTTTGGAATTTGAACTCACAAATTGTGAAAGGGGAGTTCCCCAGAGAGCACCATGCGATCTGTATTGGGAAAATATAACTTAAAAGCAAAGAAGTCTTTTATGAGCCTAAGTACATTATACGTACAGGAATAAAATTATTCATCATTAGCTCATAAGCTTTTAATGTAAATTATGGCAAAGTTTTTGGATCCGCTTCTCTATCCACTTTCATAGTGGTGCATGATCATTGGGGTTTCTTGAAATTAGTAGTAACCGATTGAATCGTAAGAGGACAATGAGGATGAATGTTTGATGATGGCCAGACTCCAAACGAACGTCGGACCCAGGCTATTTCACGGGCCAGTGCTCAGGTCACCTGCGTTGGAAACTGTTCTGTTTCCAAATTTTGGAAAACAGAAATACATCCCCCAAATAATACAATTTTTGTTTTTTACAGGAGCAACAGCTACAACAACAACTTAAATAATTGTACTCCTACAAGAAACATTGCATTAAGAAAATAAAAAATAATCATAGCGACACAGGGGTACTGGCTGCCAGTCGAAATACCCAGTGAAATACGCCAAACTAAATCATTAAATACTTCTCAATCTAGCGTCACAATATTGTTTTCACCTAGGAAAACTTTTTGGTGAAGttttttttttgtttatttggttgttttcttttgtttttCCACGTTGTTAGCTTGTTTGTTTTAATGAAGTTTCCGGGGCAAGGAGGTGCAAAGGGGAATCGTGTGTAAACTTGCTCTGATTTAAGGAGGTTTCTGTCCATTTAACATATAACTCGGTATTTTATAATCCTTTTCAGTACATAATCTTGCAGAACCCCTTCACTTCTACTTAAGTTATTTTAAAGTATTCGCTACTGGAAGGTTTCCATTTGTATCCGGGCCCCAGTTTAAAAACAGTAAATATAAGAACGCAGAGAAACATTTATAAAATATAACAAACCTTGGTAA

Protein

Uniprot

Gene family

Uniprot term	Description
O42409	Zinc finger protein Gfi-1b OS=Gallus gallus OX=9031 GN=GFI1B PE=2 SV=1
O70237	Zinc finger protein Gfi-1b OS=Mus musculus OX=10090 GN=Gfi1b PE=1 SV=1
Q5VTD9	Zinc finger protein Gfi-1b OS=Homo sapiens OX=9606 GN=GFI1B PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23226	ZINC FINGER AND SCAN DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan