Gene detail

Detailed information of ahya_s0031.g48.t1 in Acropora hyacinthus

Genomic Location: sc0000031_pilon:456800...461183
NR annotation: XP_015771871.1, PREDICTED: zinc finger protein 143-like isoform X2 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0031.g48.t1

NNNNNNNNNNNNNNNNNTaatttcagtatggCTGTGAACGGTAATGTCATATTAAAATTTCGTTTTCCTCTACAAGGAGCTCATCAAGAATGTTCCAGTGTGATTATGCTGAATGTGGAAGAACATTTAACACTGCTGCTCACCTGAGGTATCATAAGCGCACACACACTGGAGAGAAACCCTATGCTTGCTCTCATGAAGGGTGTGGCCGAAATTTTACCTCATCGGGTTACCTTCGGTATCACCAGTGTACCCACAGTGGAAAAAGAACTTTTAAATGTCAACATCCCGGCTGTGATCGTGTGTTTGCATGGCCAGCACATATGAAATATCACATGAAAACTCATACAGGAGACAGAGCGTACCACTGCACTTATGAAGGATGCAACAAGAGTTTTTACGTCTTGCAGCGACTAAACGTTCACATGCGGGTTCATACTGGTGAGAGGCCTTTCACTTGCAACGTCGAAAACTGTATGAAGTCATTCACAACTCAAGGAAATTTGAAAAATCACATGCGAATACACACAGGCGAGAGACCTTATATTTGTACGGAGGAGGGATGTGGTCGAACTTTTACCGAACACTCGAGTCTTAGAAAGCATAAGTTGATACACACTGGAGAAAAGCCTTACGTTTGCGAGATTTGTGGCAAAACATTCAGTCAAAGTGGAAGCCGCAACGCGCACCAAAAGAGGCACAGAGACGTGAACAAAGATACGAGAAACAAGAAGGTGCCTCAGAGCAAGGTGCTGTCTTCGTCTGTAATTGTACAAGGGGATGATAGAGGGCATCATGGAGAAATAATGTCTCATATTGGAAACATTGATGAACAAGGTGGAGAAGATGAGCATTCAATTTCATCGCAAGCACTGGTATATTCCCAAGATGAGCATACCATCGTAACGCAAGCGACTGGGGATCAACTGGTGTTAGCTCAACCTATCGTTGCGAAGGAAGTATCCATAGAAACAACACCAATTCAGACGATGTCCCTTCTTGTACAAACGACTGATGATGTCATAAATACTGTAGATAGCCTCTCTCAGGCAACTGCTGACGTCACATCGCTTGCAGAAACAGTCGTCACTCAACAGGCAGTTATTCACACCATGCTAGATGGTGCCGCTATCATTCCCTCAAGCACCCAAGCGGAACTGTCAGTTGTGGATCACGTGTTACCCACCTCGAACGTGGAGCACATGATGCAAAGTGTAGTTAGCCAGCACATCCTTAGTGGACATATTCAAATACCACTGACGGATGAATTAGATGCACCACAGGGGCATCATGCCGGTACAGCACCTCATCTCACGATTGACTTGGGATTTATGCAACAAACACAGGAAGAAACTGCCCAGAACACTGACGAAGATATGGCAGCAGAGGACTGTTCTTGAAATAAATTCCAAGAGGAACACTTCCCCAAATCTTAGTTATTTACAAGTCGTATAATTAGGAACAGCGGAAAGCGGGAAATGCAGCTGTTATATTAGTTGTCCAGGCATTCCCACGAAATTGATGTTTTGTTGATTAGAAAGACAAATCGCTGCATCCATGCCAGGTCTTAGTATCAATAAAACTGAAGAATATCGTTTGTGATTGCTTTTCTTATCAATGAAACGTTGTCTCCTTAATCCATTTTGGAAAAAATGTGAACGTTCATTTGGACACGTGCACTAAGGGGCGGCTCGAGGTAGCAATTTAACACAaacaccgtagagtggtaatatttcaagaccctatacatttcagaacgattaaactacaaaattttgaacattttccgaaaagaaaacatccagCACAGAGCGTAAATGTACCAGGAAAAAATATCTCATTTCGGACACCGTCCTGTAAATGAAGAAGAGCCGTGTAGCTGTCTCAAACAAAATGCAAAAGCTGCGAACTATACAtaccgtatttactcgaataagcgccgtggcgcttgtttaatttttcgcgccacaagtgcggcgcttatttaaacactgtaccagaaaaaattactttttTGGTTGCCTATAATTAGTATCATTTATATCTGGAATTATTTCTAGACATGGATGTGTGATTAATTAAACGACCAGGAATTATTTTCTTATGCAAAGCAATTTTTTTTCCTGAGCACAAATAGATTTTGTGTACCACGAGTTATTTTTGTCGTTTTTTAATGTTTGGGTGTGGTGATTAAACTAAGAGATCCGATAATTTGCTACATTCCTCCCTGAGTTGAGAGAAGGCTTGCAGCCTCGTTTTTTGTGTGAAATGATCTTGACTGTGATGACTTAGAAATCTGTTCCAGCATGTTAGAATGTGTTTAATCACCGAGGAGTTTTGGCCGCTGAGGTCTTCCCGTATGCGGTCGTGTACGGAATGTGTGGTACTGCctaccgtatttgctcgaataagcgccgcatctgtgacaaaaaagttcataatcgccgcacccccgatgctctcaccgcttatattttcgctctcgttatcatgaaactcttagttttttcaccgcgcgaatttctctcgcaattctagaattactatcagtccataggaaaattaacagatagaaagtgtaccgttgaataaaaatatagaaaaaaa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24390	ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20828	ZNF143_76, STAF; zinc finger protein 143/76	-	Transcription machinery	ko03021	deepkoala