Gene detail

Detailed information of ahya_s0036.g137.t1 in Acropora hyacinthus

Genomic Location: sc0000036_pilon:2055284...2071389
NR annotation: XP_044178338.1, uncharacterized protein LOC114973253 isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0036.g137.t1

ATGGGAGGCAGATTTTCAAGACGGTTGCGAAACCACTTGGCCATCGAAGAACCTTCCCTTACACTTGACAGATTTGGAGAATCCATGGATAACCacattgcaaaggaagcaggcgccggggctacagaaggagataccctttcaaaagctatcgagagttatgaacagagtttgcacattgctagggaagcaggcgaccgagctagagaaggaaaagcctatttgagccttgggatactttacaattcccgcagcgatcttccaaaagctatcaagtgttttgaaaagagtttgcacattgccagggagacatgcgaccgggctacagaaggagaagcctatttgaaccttgggatactctacaattcccgcagcgatcttccaaaagctatggagtgttttgaaaaggctttgaacaatgccagggaagctggcgaccgggctacagaaggagatacgtatttttgtcttgggaccgtttacagcttccgcagtgtttcaaaagctatcgagtgttttgaaaagtgtttgcacattgtcagggaagcaggcgacccggttaaagaaggaaaggccaatttgtttcttgggatactttacaaatcccacaatgatcttccaaaagctatccagtgttatgaaaaggcttcgaacaatgcacgggaagcaggcgatcggactacagaaggaaaagcctatttgaatcttgggatagtttacgattcccgcagcgattttccaaaagctgtcgactgttttgaaaaggcttccaacattgccagggaagcaggcgatcggactacagaaggagaagcctatttaaatcttgggacagtttacgattcccgcagcgattttccaaaagctatcgactgttttgaaaaggcttcgaacattgccagggaagcaggcgatcggactacagaaggaatagcctattgcaagcttgggatagtttacagttcccgcagcgatcctccaagagctatcgagaattatgaaaagagtttgcacattgccagggaagcaggcgatcggtctacagcaggaggagcctatttgcttcttgggatactttacaattcccgcaatgatcttccaaaagctatcgagtgttataaaaaggcttcgaacaatgccagagaagcatgcgcctgggcgacagaagggatagcttatttgaaccttggaacagtttacaatgcccgcaacgatgttccaaaagctatcaagtattatgaaaaggcttcaaaaattgccagggaagcaggcgatcggagtacagtaggaaaagcctatttgaaccttgggatactttacaattcctacagcgatcttccgaaatctatggagtgtgttgaaaaggctttgcacaatgccagggaagctggcaaccgggctacagaaggaaaggcctatttgcttcttgggatactttactattcctacagtgatcttccgaaagctatggagtgtgttgaaaaggcttttcacaatgccagggaaactggcgaccgggctacagaaagaaaggcctatttgcttcttgggctactttacatctgccacaatgatcttccaaaagctatcgagtgttatgaaaagacttcgaagattgccagggaagcaggcgatcggactatagaatcggtgacctgtttgatgcttggcctaatttaccattcacgcaacgatcttccaaacgctttcgagtattacgaaaaggctttgaacattggcaggaaagcagccgaccgggatagattaatccgtgccagtcaatatctcgagaatttgtacttggccattggcgattttttgaaagagtatcgtgaaaagacttcgaTATTCAACGGAGTGGGTACTTATACTGAGGAGTCAACAGAGGGACCAGTGTGCAACATCCAAGtgacccctcctgagattaatctacgtggtcccagggccttgaaggcctataacagagctcttacagaaggaagaactcgtgtaagaaggattccgatcatgttgagtggacaggaccgttcaggaaaaacaagcctaaagaagtcgcttcagggattacgattcaacccagatgaagatagcactgttgggatagatgccgatccatcctacttcaaagtaaccactgagatatggaagacaggggaaaaggatcaagcagcaaacaaagaggaaatgtctgcttcttttcaacatcatgtagctcgcgtagttgttgagaatctaagggaacaagaattgacttctgaagtaaagactttgtacaaatcgaaagatcttgaagggctgtccactggaatcacttatgatcaagttgactcgtctgcagattcgtttacaactgcaggaatcgaaacaaaagattatgcagattcttcaaagtcatccggtgatgcacacgtcgttggtggcagtcgaatctttcaaaccacagagaattacccagaactgacgaaagccagagataacactgtttgctcgggaatgataccgaaagagatagaagcgttgattaaAGTGTATATGACACGAAAATTTTTCTTGGCGATTTTAATAGTTCAATATTACTTGTAA

Transcript

ahya_s0036.g137.t1

cttctttctttccttcttATTGTACGCCGAACAACGAATGAGTTAACAAGACACGAGGCACGATCTACAGCTACCCTGATACAAAAATAAAACACAAAGCGAAGAGTCGCACTTTGAACGACTATGTGCGTCCAATCACGTTGGTGATTGTCTCAGAAGCCAATCAAAGGGGATTTCTATGTCCATATCGGAAATAACTTACGTTCAATGAAAGGCTTTTAGAAAATCATTTCACATTAACATGGGAGGCAGATTTTCAAGACGGTTGCGAAACCACTTGGCCATCGAAGAACCTTCCCTTACACTTGACAGATTTGGAGAATCCATGGATAACCacattgcaaaggaagcaggcgccggggctacagaaggagataccctttcaaaagctatcgagagttatgaacagagtttgcacattgctagggaagcaggcgaccgagctagagaaggaaaagcctatttgagccttgggatactttacaattcccgcagcgatcttccaaaagctatcaagtgttttgaaaagagtttgcacattgccagggagacatgcgaccgggctacagaaggagaagcctatttgaaccttgggatactctacaattcccgcagcgatcttccaaaagctatggagtgttttgaaaaggctttgaacaatgccagggaagctggcgaccgggctacagaaggagatacgtatttttgtcttgggaccgtttacagcttccgcagtgtttcaaaagctatcgagtgttttgaaaagtgtttgcacattgtcagggaagcaggcgacccggttaaagaaggaaaggccaatttgtttcttgggatactttacaaatcccacaatgatcttccaaaagctatccagtgttatgaaaaggcttcgaacaatgcacgggaagcaggcgatcggactacagaaggaaaagcctatttgaatcttgggatagtttacgattcccgcagcgattttccaaaagctgtcgactgttttgaaaaggcttccaacattgccagggaagcaggcgatcggactacagaaggagaagcctatttaaatcttgggacagtttacgattcccgcagcgattttccaaaagctatcgactgttttgaaaaggcttcgaacattgccagggaagcaggcgatcggactacagaaggaatagcctattgcaagcttgggatagtttacagttcccgcagcgatcctccaagagctatcgagaattatgaaaagagtttgcacattgccagggaagcaggcgatcggtctacagcaggaggagcctatttgcttcttgggatactttacaattcccgcaatgatcttccaaaagctatcgagtgttataaaaaggcttcgaacaatgccagagaagcatgcgcctgggcgacagaagggatagcttatttgaaccttggaacagtttacaatgcccgcaacgatgttccaaaagctatcaagtattatgaaaaggcttcaaaaattgccagggaagcaggcgatcggagtacagtaggaaaagcctatttgaaccttgggatactttacaattcctacagcgatcttccgaaatctatggagtgtgttgaaaaggctttgcacaatgccagggaagctggcaaccgggctacagaaggaaaggcctatttgcttcttgggatactttactattcctacagtgatcttccgaaagctatggagtgtgttgaaaaggcttttcacaatgccagggaaactggcgaccgggctacagaaagaaaggcctatttgcttcttgggctactttacatctgccacaatgatcttccaaaagctatcgagtgttatgaaaagacttcgaagattgccagggaagcaggcgatcggactatagaatcggtgacctgtttgatgcttggcctaatttaccattcacgcaacgatcttccaaacgctttcgagtattacgaaaaggctttgaacattggcaggaaagcagccgaccgggatagattaatccgtgccagtcaatatctcgagaatttgtacttggccattggcgattttttgaaagagtatcgtgaaaagacttcgaTATTCAACGGAGTGGGTACTTATACTGAGGAGTCAACAGAGGGACCAGTGTGCAACATCCAAGtgacccctcctgagattaatctacgtggtcccagggccttgaaggcctataacagagctcttacagaaggaagaactcgtgtaagaaggattccgatcatgttgagtggacaggaccgttcaggaaaaacaagcctaaagaagtcgcttcagggattacgattcaacccagatgaagatagcactgttgggatagatgccgatccatcctacttcaaagtaaccactgagatatggaagacaggggaaaaggatcaagcagcaaacaaagaggaaatgtctgcttcttttcaacatcatgtagctcgcgtagttgttgagaatctaagggaacaagaattgacttctgaagtaaagactttgtacaaatcgaaagatcttgaagggctgtccactggaatcacttatgatcaagttgactcgtctgcagattcgtttacaactgcaggaatcgaaacaaaagattatgcagattcttcaaagtcatccggtgatgcacacgtcgttggtggcagtcgaatctttcaaaccacagagaattacccagaactgacgaaagccagagataacactgtttgctcgggaatgataccgaaagagatagaagcgttgattaaAGTGTATATGACACGAAAATTTTTCTTGGCGATTTTAATAGTTCAATATTACTTGTAAATGTATGCAAACTTTTACAATGCTAGCATATTTTTTTCCCTGATAAATAGACGTTGTATTTGGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF12862	ANAPC5	Anaphase-promoting complex subunit 5	Repeat	Interproscan
PF13374	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF08238	Sel1	Sel1 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan
IPR026000	Domain	Anaphase-promoting complex subunit 5 domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052699	Family	Regulatory & Mitotic Spindle Associated	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10098	RAPSYN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14026	SEL1, SEL1L; SEL1 protein	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala