Gene detail

Detailed information of ahya_s0056.g9.t2 in Acropora hyacinthus

Genomic Location: sc0000056_pilon:276715...285275
NR annotation: XP_015759618.1, PREDICTED: uncharacterized protein LOC107338878 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0056.g9.t2

ATGATTGGAGTGAAAGTTGGTGCCTGTGCATCTTTAGAAGATAATGGAATTAGATCTTTGGATGATCAGCTGAAACTTGAGTTAAACCATCACTATCAAGGCTGGCAATCGCCAAGTCAAACATGGATGGTACCAAATGCCTTTGAAATGAAAGGAGGTAGAGATAAAAGGGGGCAACTTGCAGAGGAAAAAATTTTTAACCTTCTCCATGACTTTGGAAACAATCGCAAAGAACCAATGTTTGTTGTGCATTCGTACAATTTTAAGGAGAAAATTAAAAATTGGCAAAACCTAAAATTTGATGAAAAGAAATATGTAATAGGAGAACATGATTTTGTGCTCATTCACAGGAAGCATGGAGTCATATTTCTTCAGGTAAAGGCGGGCACAAAATGTAAGTCATTTGGAGAAGCCAATTCTCAATTGGAAAGAGACAAAGAGTCACTTAAGTGTTTTGCCCGGGAAGACTTGAAGGATAATAACTTGAAGAAAAAAATGAATAAGGAATTGCAGGGGGAACAGCACGCATATGTTGTGATGCCAGAGCTTGAGCGAGGTAACTCACCTCAAGGGTCAAAGGGAATATTCAAGGAAGATGTTAGAGATGTTGAGGCATTTTCAAAGTGGTGGGAGGATAACGTTCGACCAAGGCCAGATCCTGATCAGGAAGTATATAACTGCCTAGTGCTTCGCTTTGTTGCAACGGTTCATTGTACTCCTTGCCCTTTAAGCTCCTTCATTGAGAGAAACAATAAAGTGCTGGTGTGGAAAACAAGAGAGCAGTCAAGGGTCCTTCTTGATATTTCATCAGAAGAGCTGTGGATCTCAGGCCCAGCAGGAAGCGGCAAGACATGGGTTCTTATAGAGAAGGTGAAAGTACTCGGGGCAGGTCGGAAAGGAGAAAGGATCCTTGTGGTTTGCTACAACATACCACTTTCCAAGATGTTAAAGGAACAATTCAAAGATTTCAGTTGTGTGGTAAATGTTAAAACATTTAAAAAACTTCTCTATGAAATTACTAAAAAAAGATGGCAGTCTGACCAGGAGAAAGAAAAAATCATTAATCTTGCTGTGAGGTTTTTGGAGGGGAAGACACCTGAATATGATCATATTTTTGTTGATGAGTGCCAGGATTTGATTGGTGACCAGTGGCCAGTTCTCTTCCAAAAATTGTGGAAAGGCAATGAAGATGATTCTGGTACCACAGAAGCCATTGGATACAAATACAAATGGTTCTTCTATGACACCAACCAATATATGGGATGGTCTGGTGAGCACCTCAAGAAACACGAGAAGGCGCCTAAAGCAAGTGTCAGACTCAGCCGTGTGCTTAGAAATACTGGAAACATCTTTAACCAGTCTAAAAAGTATTTACAACCCTGCTCTAAAGAAATCACGCTGGGACACGACGAATGTGGTCTGAATATTGAATGGAAAGCCAAATTACCTCCAGGAGAGGTCACAGAGAAAGAAGGAGCAAAATTAGTAGCTGAGTGCATTGATGATCTCAGGAAGAGGGGCGTCTTAGAGGCAGATATATGTGTCTTGGTGCAGAATGTAAAGGTAAGAGACTTCCTCAGCCCTGAGCTAAAAGAGCTACATGTGGACAACTACAATGCAGAGAAGCGGTTAGAAAGGAACAAGAACACGGTTGTGGTAGAAAGTATAAGGCGGTTCAAAGGTTTAGAATCCAAAGTAGTAATTCTGTATAACCCTGAATTTACTGTGAAATACAAGCACATCAAGGAACTGCTCTACACAGCATTTTCAAGGTGTTCGTGTTACCTAGTTGTTATCACTAGCACGGAAGGAATGGTTGCATTACAATCAGTGGATGGTGTCAGAGTACAACCAGTGGATGGTGTCAGAGTGGAAGGTCTTGAATatgaagatgatgatgattttgatgttgaggtgtatgatgaggatgaagatgatgataaggatgGCAATGGCAGCACACTTGAAACGGTGTCGGAGGAGTTGCAGAGATTTGAGATGTGA

Transcript

ahya_s0056.g9.t2

CGCTACCCGTACGTGAAGAGGGCCGAAACGTCGAGACGGATAGCAGAGCTCTTTCGCGTTTTTGTTCCAAGTTTGCGTCAAGACAAGTCACCTGACACCGAAAGAGTGAATTTAAGAGTTTAATCCGTGACAAAGGACATTTGGGAAGGCACAGAAGCAATGATTGGAGTGAAAGTTGGTGCCTGTGCATCTTTAGAAGATAATGGAATTAGATCTTTGGATGATCAGCTGAAACTTGAGTTAAACCATCACTATCAAGGCTGGCAATCGCCAAGTCAAACATGGATGGTACCAAATGCCTTTGAAATGAAAGGAGGTAGAGATAAAAGGGGGCAACTTGCAGAGGAAAAAATTTTTAACCTTCTCCATGACTTTGGAAACAATCGCAAAGAACCAATGTTTGTTGTGCATTCGTACAATTTTAAGGAGAAAATTAAAAATTGGCAAAACCTAAAATTTGATGAAAAGAAATATGTAATAGGAGAACATGATTTTGTGCTCATTCACAGGAAGCATGGAGTCATATTTCTTCAGGTAAAGGCGGGCACAAAATGTAAGTCATTTGGAGAAGCCAATTCTCAATTGGAAAGAGACAAAGAGTCACTTAAGTGTTTTGCCCGGGAAGACTTGAAGGATAATAACTTGAAGAAAAAAATGAATAAGGAATTGCAGGGGGAACAGCACGCATATGTTGTGATGCCAGAGCTTGAGCGAGGTAACTCACCTCAAGGGTCAAAGGGAATATTCAAGGAAGATGTTAGAGATGTTGAGGCATTTTCAAAGTGGTGGGAGGATAACGTTCGACCAAGGCCAGATCCTGATCAGGAAGTATATAACTGCCTAGTGCTTCGCTTTGTTGCAACGGTTCATTGTACTCCTTGCCCTTTAAGCTCCTTCATTGAGAGAAACAATAAAGTGCTGGTGTGGAAAACAAGAGAGCAGTCAAGGGTCCTTCTTGATATTTCATCAGAAGAGCTGTGGATCTCAGGCCCAGCAGGAAGCGGCAAGACATGGGTTCTTATAGAGAAGGTGAAAGTACTCGGGGCAGGTCGGAAAGGAGAAAGGATCCTTGTGGTTTGCTACAACATACCACTTTCCAAGATGTTAAAGGAACAATTCAAAGATTTCAGTTGTGTGGTAAATGTTAAAACATTTAAAAAACTTCTCTATGAAATTACTAAAAAAAGATGGCAGTCTGACCAGGAGAAAGAAAAAATCATTAATCTTGCTGTGAGGTTTTTGGAGGGGAAGACACCTGAATATGATCATATTTTTGTTGATGAGTGCCAGGATTTGATTGGTGACCAGTGGCCAGTTCTCTTCCAAAAATTGTGGAAAGGCAATGAAGATGATTCTGGTACCACAGAAGCCATTGGATACAAATACAAATGGTTCTTCTATGACACCAACCAATATATGGGATGGTCTGGTGAGCACCTCAAGAAACACGAGAAGGCGCCTAAAGCAAGTGTCAGACTCAGCCGTGTGCTTAGAAATACTGGAAACATCTTTAACCAGTCTAAAAAGTATTTACAACCCTGCTCTAAAGAAATCACGCTGGGACACGACGAATGTGGTCTGAATATTGAATGGAAAGCCAAATTACCTCCAGGAGAGGTCACAGAGAAAGAAGGAGCAAAATTAGTAGCTGAGTGCATTGATGATCTCAGGAAGAGGGGCGTCTTAGAGGCAGATATATGTGTCTTGGTGCAGAATGTAAAGGTAAGAGACTTCCTCAGCCCTGAGCTAAAAGAGCTACATGTGGACAACTACAATGCAGAGAAGCGGTTAGAAAGGAACAAGAACACGGTTGTGGTAGAAAGTATAAGGCGGTTCAAAGGTTTAGAATCCAAAGTAGTAATTCTGTATAACCCTGAATTTACTGTGAAATACAAGCACATCAAGGAACTGCTCTACACAGCATTTTCAAGGTGTTCGTGTTACCTAGTTGTTATCACTAGCACGGAAGGAATGGTTGCATTACAATCAGTGGATGGTGTCAGAGTACAACCAGTGGATGGTGTCAGAGTGGAAGGTCTTGAATatgaagatgatgatgattttgatgttgaggtgtatgatgaggatgaagatgatgataaggatgGCAATGGCAGCACACTTGAAACGGTGTCGGAGGAGTTGCAGAGATTTGAGATGTGACTCTTCTTCAGAAGGTTTACAAAAATAAAAAAAGATGCAGGATGGAAGAAAGTGATTAGGATGATCAGACTTTCAGAAGTAATTTTTTTTATGCATCGTAACGCATTGCTTTAAACCAATCGTGTTATTGTAAAAATGGTTTCTAAAAACCAATGGTGTTAGCACAGAAACCATAGATTCAATAAATAAAAGTAAGATTTGTAGACAAATTCAAATGCATTTTTGTCAATATGTTTTATTGTAAGTAGACAAAGAACAGTAACGATATAAATAGAAATGTTGTAATGAAAAGCAATGAGATTGCTTTGCATATTTTCAGAAAAAACTGAATGTGGAAGCATTTCACAAAAAATTGATAATTGCATTTGACAATAATTTAACCAGCGGATATGAGCAGCCTGCAACACTCTGAGGAATGTCGAAGATTCTGTTCTGAGAGCTGCTTCTCAATTTTATGTACAGCACATAATAATGTAACTCTCTTTAGCCTACAATTTCCAACATATCCagaatatgttaagaacaaactggaggctgagattttttgcatgttgaggatctgtaaaatacaatataatatagctcttataatctaagaatagtaataagaatatttcagccccaaatcggcagaaaGAATGTTAGATGAAGAAATGCGCCAGAGTACT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13245	AAA_19	AAA domain	Domain	Interproscan
PF13538	UvrD_C_2	UvrD-like helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000212	Family	DNA helicase, UvrD/REP type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR027785	Domain	UvrD-like helicase C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000725	Biological Process	recombinational repair	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003678	Molecular Function	DNA helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan