Gene detail

Detailed information of ahya_s0059.g13.t1 in Acropora hyacinthus

Genomic Location: sc0000059_pilon:183184...215305
NR annotation: XP_029179527.2, sorting nexin-27-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0059.g13.t1

ATAGGTGACAAATTCCCCCCCTACCCCCACCGGAAAGCGAAGTTAGTTCTATGTCACGTGATAAATAACAAATGCAAACATGGCGGAAGAAGAAGAAGAGCGAAAGCCAAAGGTTGATCCGTATGGACCTCGATTGATCGAACTTCAGCGCGGAGAAAATGGATTTGGATTCAATGTTCGAGGACAAGTATCAGAAGGGGGACAACTCAAGTCAATAAATGGTGAACTTTATGCACCGCTGCAGCATGTTAGTGCTGTTTTGGAAAGTGGTCCGGCACACTCCGGCGGAGTTCGCATAGGAGACAGAATCCTTGAAGTGAATGGTGTAAATGTTGAAGGTGCAACTCACAAACATGTGGTGAATTTAATAAAGAAAGGAGGAGACAGACTGACTCTAGTTGTAATATCTGTTAGTCAACACGAGGCAGAGAAACTTGAAAGTGAGAGTTCATCTGGAGAATATTACGACTATTCCGACAGACAGGTTATTCCAATATCTATACCGGAAACAAGTCAAGTCAGTTTTGATGGGGAAACATATGTGGTTTATAACATATACATTGAGGAAAAACACATTTGTTCAAGGAGGTATAAAGAATTTGCAAACCTACACAATAAGCTAAAAAAGGAGTTAAGAGAATTCCGGTTTCCAAAGCTTCCTGGAAAATGTCCTTTTCACTTGTCTGACCAACAGCTGGAGAATAGAAGAAAGATTTTGGAATCTTATCTTGAAAAAGTGGTCTCAGTGAGAGTAATTGGGGAATCGAATTTTATGGATGAATTCCTAAAATCTTCAGACAACCATGTCACGGACGGAGATGAAGAGGATGGTAGTATTAAGGTTGAATTACGAGTGTCTTTGCCAGATGACTCTGTTACAACTGTGGCAGTTCTAAAGAGTGAAAGGACAGATGTTGTGTTTGAGGCTTTGGTAGAAAAACTTACCCTTGGCCAAGAAAATTGGTCAAATTTTGCCCTCTTTGAGATTATGGAGGATGGGTTTGAACGAAAACTCGAGAAAAATGAGTTCCCGCATACTGTGTACATCAGGAGTTACTCAGCTCTTTCATCGACTTCTCTGGCCTTGAGGAAGTGGAATTTCACTCTAGCCAGGGAAGCTGAGATGGTCAATGATGAAATTGCCCTGAACTTGCTTTACAGCCAGGCCGTCAGCGAAGTAAGAAGAAGGAAACTGCTACCGGGAAAAAAAGTACAGCAACTTAGAGAACTACAGTCAATGAATAAAAAGAAAGAGTACCTTGATGTTGCCAGGGCATTAGAGGGATATGGAACTGAGGTGTTTCCTCATTGTGCTTGTGATGCAAGAAAGAGCGGACACGTCATTGTCTCAATAAGTATTGAAAGTTTCCGATTACAAGCTTGCTCAGATCAAGGCGAAAGACAGGATCAGGAGCATACGTTTAATTGGGAAGAGCTCTCCCAATGGGAAGCTGACCAAGAAGCCATGGCTTTCTGCTTTGAATACACCAAAGAGGGCAGAAAACCCCGATGGGTCAAAGTCTACTCAGAATATTTTTTCTACATGAACGCATGCGTGGACAGAATCATCCAAGAGATTGAATGGAATAAAAGGGATGGTATTTCATCGGTCTACACGAAGAATGAAGATGGGAATGGATTAGATGAGGACTCAGCGGACAGCGCAGAAACACAGGACACGACTGTCAAACCCGCTGCCAATCAAACAAAGACCTCCTCAAAGGGAAATCAGAGATTCGTGTTACCCAAAACAGCCCCGAAGAAATTTCAAGCTAACATCGATGATGAGGACTTGTAAATGTGAGGTGAACTTCCAGCAAATTGCACGTATGGTTTTGCCTGAAAGATCAACGGCATCCGGAACCTCGTTTCTTCTCATGCCTTCCTGAGGTCATACAAATGATGTCCAGCGAAATGGTTTTCTTTGTACGATAGACTGTCTCTCCCGGTGCATTCGTTATTGGCTAACAACTTGTTTGTGCTTTGGTGTAGTTAATCGGTGTACTGCTTTTCGTCAATTCCTCATAAAACGTTTAACGTTTGTGGGGTGATTTTTCTTTAACTTCCACTCTTTTGTTCGGACAATTGTGCGCTGGGCCTTCCGTAGTTCTTCCGTCTGTTTAGGTGTCATCTGGAGATAATTTCGTAAGCCACCGGGCGATGCAGCGCCGTTCTGCCGGGCAGAACTAAGTTTTATTAGTTCAGTTAGAATGCGTGCAAGCGCTCTATGAAATCCAAGCATGTACACACGGATTTAGCTAATCAGGAGGATAAACAAGGGCAAATTTATTACAAATATAAGTCATATATAACAAAAAGGTTGCGGAGCTCCAATTAAATGAACGCCAGTGTGACCAATTAAACTCTGGAATATTAAAATCATTCCAATTCCAACTTTGTTTGTTCACGACTATAAAAACCGCGCTAGCGGGAGAGTATTTTGCGATTTTTTATTACTGAGTGCGGTTAATTTTGTTTGTGCACAGGTGAAAAGTTCACCAACGGGTTGAGTCAGCTCGTTGACTTGATAAGTTAAAATCATTATGTTATAGTGTGACTTAAGTTCGTGTCATAGTGCGATATTCTTTTCTTAAATTTCAGTTCAGAGAACGCATCCAGGAAAATGATTGTTGCACTAGTCATTCCCCACCTCGCTGAATGGGAACAGAACTAATGCACAAATGAAAAATGTAAAGAAAATAGAAGTGTTCCTTCACCCATTTTACCCAGTTTACCCACTTTAAAATACAGGGAAATTATGGAAGATATTGCGCATTGCAGTTATTTCTATTTGAAATATTTCTTTAAAATGAAGTAATAGAGTCGTATCAAACCAACCTTGAACCGACCCATGGCCATCATCTTGCACGTGATAACGACAGTTTCCTATTTCGAGATTTATGGTTGATTTTTCGTCGAGTGAAAGATATTCATAGAACTGAGAAATAATAGAGTATCAATGCAATTAGTAAAGCAATGTGGTATAAATGCAAAGGAGTAAATAAACTGCTGTATTCAAT

Protein

Uniprot

Uniprot term	Description
Q3UHD6	Sorting nexin-27 OS=Mus musculus OX=10090 GN=Snx27 PE=1 SV=2
Q8K4V4	Sorting nexin-27 OS=Rattus norvegicus OX=10116 GN=Snx27 PE=1 SV=2
A5PKA5	Sorting nexin-27 OS=Bos taurus OX=9913 GN=SNX27 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21271	SNX17-31_F2_FERM	Sortin nexin 17/31, FERM domain, F2 lobe	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF18116	SNX17_FERM_C	Sorting Nexin 17 FERM C-terminal domain	Domain	Interproscan
PF00788	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR048767	Domain	Sortin nexin 17/31, FERM domain, F2 lobe	Interproscan
IPR000159	Domain	Ras-associating domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR040842	Domain	Sorting nexin-17/31, FERM domain	Interproscan
IPR037831	Family	SNX17/27/31-like	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR037827	Domain	SNX27, atypical FERM-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12431	SORTING NEXIN 17 AND 27	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:1990126	Biological Process	endocytic recycling	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17936	SNX27; sorting nexin-27	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala