Gene detail

Detailed information of ahya_s0097.g93.t1 in Acropora hyacinthus

Genomic Location: sc0000097_pilon:1305133...1310436
NR annotation: XP_015777019.1, PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0097.g93.t1

CAGTCGAACCCTTTTTCAAAAGTGTGTTGCAATTGTCCACTGAGAGTGATGTCCACGGAGCCAGAACAGATGAGGAAGATTTTCGTCGGTGGTCTCAATCGAAGGACAACCGAGGAATCTTTAAAAGATTATTTTTCCTTATGGGGAAACATCGTAGACTGCGTGATTATGCGAGAGGGAAAGAATGGACCTTCGCGTGGGTTTGGGTTTGTGACTTTCGATAGCTCCCAGGCCGTGGACGATTGTTTGACAGTAAAGAGACACGAACTTGATAACTGGGAAATCGAACCAAAGCGTTCTGTGCCAAAAGGCGAAGCTCAATCTCGAACACGTAAGATATTTGTTGGAGGTCTGGCAAGTACTGCCACGGAGGCTGATGTAGAGGACTACTTCAGCAAACTTTGTCAAAAATCTGGCTGTGGAAAAGTTGTCGATGTGGATTTAAAGAGAGATAAAGAGAATCCCAACCGCCTGCGTGGTTTTGCCTTCGTCACATTTGACTCGGAAGAGATTGTGGAAAAAATTTGCTCGATTTCATTTCATCAGATCAAGATGAAACAATGCGAGGTTAAGAAAGCGGAATCACAGGCGGCAATGAGAAAGAAGGAAGAACAAGAAATGAAAGCCAGTGGAAGATCTCGTGATCGCGAGTATGATTCCGATTTGGGTACGCCAAATCTTGGAGGTTTACCTTTGAACTGGGCTCCAAATACAGGATTTGGTGGACTAAATCAGGGATTTGGTGGCCCAAATGGAAGAGGGAATGTAGGTGGTATGAACATGAGTGGCTTTGGTGGTGGAAACTTCAGCAATCCAgctgctgctgctgccctgctgtctgggttgaatcctgctgctTTTTCTGGGTTTAATCCAATGGCAATGGGTCCTGGTTTTGGATTTAATGGCATGGGCTTTAATGGGTTTGGTCCAAGCTTTTTTGGTGGGTTTGGTGGATTTAGCCCtggtggatttggtgctggtggtggtggaaatggaggaggtggCACTTCTGTTGGGACTGGTTTTGGTGCAGAAGCTGGCAGTTATGGTGGAAGTGGACCCCGTCTTTCTAGCTCCAGTACATATGAAAAAGATAACTATGCTGATGTTGCCTATGGGTTAGTTGACATGAAGGGTTCATCTGCCAGTGAACGAAACTCTAGTGCCGGCATCCCTGGTGCAGCCACAGATAGTATTAGCAATGCCATGGCCACAGCATATGGACATGGGGCATTACCTGGAGGATTTGGTGGTTTTCCTGGTATTGGTGACTGGAGTCAACTGGCAGGTATGTCAGGCAGTGGATCAGGGGTGGGCAGAGGTTCAGACTATCAAATTGGGAACTACAACCAGATGAATTCTAATTATGGTCCTGCTGGTCGCCTAAATAGCCGTGGCAGTGGTGTTGGGGATAAGAGCAACAGAGGTTATAGACCCTATTAAGTGTAGGTATTGTAGCAGTGAGCACAGACAGTTGAGCAAAGGAGTTAACTTCTTCAATGTGCAATTGATACAACAGAATAGACAAGAAAAATACAGAGCAGTATACCATAGAGCAAAGATGCCAGAAGAGATGTTCTTCATGGCATACAGAGATAGCAGATAGTGTATTGTTGGCTGGCAATATTACAAGTAGTTTTAAATATCATGATGAGAGCCATCATAATATTAAATGTTGTGGGAATCTTGACTTTTGTCTCGGCATACAGTATCTCTGTTATTTTGTTGTTTTGTTTCCTTAAAATTATATTTTGATTTCAATATTAATCGAACAAGGCACGTGCAGATTTTCAAGGGTTGGTTTTAGTATTTCCTTATACATTTCCTATTAATTAAACCATGCCTTGTTTCTGGTATCCATGCTATTGTTGGTGCTAATTCTTCCCATGCAAAAGCAGTCATAACAATGTTTCATTCTAACCCAATAATTATTATTGTTGAAAGCTCATCAGTTATATTATGCAAAGTAAAGCCCTTTTCAGCCATCATCTAGTTTCTATCACTATGACAGAAAGTAATACTGGCCAATTCTGTTACCCTTGTATTGCAATGTGATGGATGCAAATTATTAGTAAGTTTAGGCAGTGCAATTTAGACAGTTAACTGCTTAACAGTGGAACTGGTTCAGCCCATTAACTACTTGTGACGATTTCTAATCTCACATTGTTGGGTAAGGGCAGTAACATTTGGCGGTTTTTATTGTGATTGCTTTGATATTGTGTTTTGCACCCGTAACATGCATGATGTTTAAGAGTCTTGAATTAAGAATTAATTTCATGACTACAACAAATTTTTTTCTTTGGATTTCAGTTAATTTAAGAGGTTGAGAACTGAGTTGTTTGTGTTTATGCAAAGAGTAGAAAAGTAGCAAAAATGGTTTTCCTTTAATGGCATTGAAATAGAATAACATGCCTCAGAGTAGATGTGAGAGGATACTCTTTTTTCTTTAAGGCAGGTATGAAAGAAAGAGGTTTATAGCCTTTTGCTGAAATTGAAAGAAATCTTTCAGATTATTTGGCTGTAAGCAGGTGCCTGCTCTTTTTAACTTCTAGTTATTTAGGTTCTTAGTAGTATACACTAGTAGTGACTGGATAATAGCTTTGTAGTCTTCATAGCTGTCATCAGAGAAAAATTATAATAATTATTGAAATAAACACGAATACATGAAAGAAGTGgtttgttttttgttttggctattgtttgttgatttgtcatctttgtttatcattttATATCCATAATATCCTTTGACTCGTTTTCCTAATTTTGTCAGCTTTCATTACCTTAGGTTTGTCTTTGAGGGCCCCTGCCACACCCTTGTGAACGAATTTTGTGAAAGTTGAAGGACTACATGTGACTCTTTTCTGAGTACCAAAACGCAAGTCATCAAGAGGAATTGTCTTTCCTAGTTGAATGATCGTCCTTCTCCATGCACATAATATGGCTCATGTTTGACATATCACAAATCACAACTAAAATTGCACTTTTTTCACGAAGCACTAGTCTCCCTTGCAGTCGTTGTTTGGGCTTTCACGCAACGCTCGCCCCGCTAATCCAACGATCAATAGTCGTCCATATCGTCTTCTAGTGAATAGTATTTTCCTGCGTTTGACTTGGTAATTAGCAGGAAAATATGCTCTCATCGGTATCTTATGTTTTTTTTTAGCCGTGCGCGCTGatgttttcacctctactttgtggtcggatctccgggccgcggttccccagggatccagtgctttacaatcccttgcgagttctcttccggatgttgcgttggctagcagagcatccaatacctccaccaagtaattttcttcctgcaacagatggaggtcttgggcacgagaacatggcttgacagtttttcccgcttctccgtttcacttcgctatctatctgcttcatttaatgactgaggcgaagacggcatctcccctggagtcagcagttcacatcattacctggtttcaccagctaggtggcgagccgtctccttctgatcatccgttggtgaagagtactcttgcgcagcgtttcctggcccgtcaaacaatcaagaaggagcctatcacagtctctcagttagagcagttagttgcctccaaggcggactcaatggcctctttgtataacattcgttcggttgttatttgcttattagcttttgctcccttcttcagatttgatgagcttgctaggttttttcgatccgatgtcaagatcgaagatgagatgttaaagttatttattcaatctagtaaaactcatcattatagagatggagcttggattgttgtagcctcttccaggaaagcaacttgtccggttgctatgatgaacttttatttagatagagctgggctttcctgcgatagccctttgttttgccagctttccaaaaataaatgtggttataagcc

Protein

Uniprot

Uniprot term	Description
O43347	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1
Q61474	RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1
Q8K3P4	RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus OX=10116 GN=Msi1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan