Gene detail

Detailed information of ahya_s0148.g28.t2 in Acropora hyacinthus

Genomic Location: sc0000148_pilon:421996...452628
NR annotation: XP_029206893.1, afadin- and alpha-actinin-binding protein A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0148.g28.t2

ATGAACGAGAATGTCCAAGATTGGGGCGAATTTGTCAACCGTTATACTTCTTGTTCCTCCCGGAATTCCAGCCCGGATAGAGACACAGTCTTTGGCGATGTTAAACGTACTCCTTCGCCGGGTTTGCCGCTGTTCAGTTTAAGCGATAAACACTTCTGTCGAAGAGATAACATTGACCAATGTCTAGCGTATTTAAACCAGGAGTTTGGAGTCCTTGGGTTTTCTTCATTATTCACACCATCTCGCAATGGCAGCGGGCCACCAGACACATTTGACATTGTTAAACTGATCAACAGTACTTATGAACTGTTACAACAACAGCAACGAAGTGCAAAACAACGAACTGACCTCGAGGAGAAAAATCTTCGATCAGAGTGTGATAACGAGCATCTCATCCAAGCACAGAAAAGACTAAAGGAACAATTAGAAGCGGCGCAGCGAGAAATAGCAATGGGGAATGAACGAGAACGCCAGCTTCAGAGCAAACTTTTGAAGACGAAAGAAGATCTTAAATTGGAGAGAGAAGAGTTAAAGAAAACGAAAGCCAATGTGGTGCACTTACAGAAACAGTACGACCACGAGGGGCGGAAAAAAGAACGCGAATTCAACAAACTCAAGGACAGAATTCACCAACTGTTAACTGATAAAAGTCAGGAGAAGAAAGTTGGTTTGGACATCTTAAATTTGGTCAAGAGACCCAGTGGGCAGCGTGCAACGTGGAAAACTGGGACAGCCAAGAATGAAGAAGAAATGTACAGAGTACTAATCACTGGCTATGAAGAAAGGCAAAAGGAGCTGATGGTAGAAAACAATGATCTGAGAGAATCACTTCAAAGTATGCAGACAGAATTGATAAACCTGTTGAATCATCACGATGAAGATCAGAGTGAACACACAGACAATGAGACGGAGGAGTTTGGAGTCCTTGGGTTTTCTTCATTATTTACACCATCTCGCAATGGCAGTGGGCCACCCGACACATTTGACATTGTTAAACTGATCAACAGTACTTATGAACTGTTACAACAACAGCAACGAAGTGCAAAACAACGAACTGACCTCGAGGAGAAAAATCTTCGATCAGAGTGTGATAACGAGCATCTCATCCAAACACAGAAAAGACTAAAGGAACAATTAGAAGCGGCGCAGCGAGAAATAGCAATGGGAAATGAGAGAGAACGCCAGCTTCAGAGCAAACTTTTGAAGACGAAAGAAGATCTGAAATTGGAGAGAGAAGAGTTAAAGAAAACGAAAGCCAATGTTGTGCACTTACAGAAACAGTACGACCACGAGGGGCGAAAAAAAGAACGCGAATTCAACAAACTCAAGGACAGAATTCACCAACTGTTAACTGATAAAAGTCAGGAGAAGAAAGTTGGTTTGGACATCTTAAATTTGGTCAAGAGACCCAGTGGGCAGCGTGCAACGTGGAAAACTGGGACAGCCAAGAATGAAGAAGAAATGTACAGAGTACTAATCACTGGCTATGAAGAAAGGCAAAAGGAGCTGATGGTAGAAAACAATGATCTGAGAGAATCACTTCAAAGTATGCAGACAGAATTGATAAACCTGTTGAATCATCACGATGAAGATCAGAGTGAACACACAGACAATGAGACGGAGGAAAGGGAACCTAGCGAATCAGGATCAATTGAAGAGCTTTCTACAGGTCATTTTCATATGCCATATGACCTAGTTAGGGAAGGAATCGAGAAAAACCTCCGAGAAAAGTGGCGACTATTAAAGTGCCGATTAGAAGAAGCAAGCAAAGTATCCAATAATGGTTCCAATGATCAAGACTGCTCGAAAGAGGTGAACTTTCAAGAGGAAGTTGAGCGGTTGGAAAGACAGTTGGAAAACTACAGACACGTCGTGGAGCAACAAGAAAGCCTTATCGAGTCATTGCAAGGCAAGATTAAAAGTCCGACTAAAGACTCTCTGTTCCTGACCGACCCTGAGTTGTTGGAGGAAAAAGAAAAGTTTTCGTCGGATAGAGAGTTTTTCAATGAGCAACGGGCAGCAATGGAGAACCAAAGAAAACAGTTAACAGATGCTGCGATTAAATTGGGACACGAGAGAAAGAAGTTCGAAGAAGAACGCGCTTCTTTTTACAAAGCACAACTTCTGACTCCAGTAAGAAAGCAGTCGAATGGAGGAAGATCTTCCAAATCACCGGAAGGTCTGCGACTTCAGTTTAGCTCTGCTTCGTTTTCACCGGCTCCAAGAAATCTTTTTCCATCATCGGAGACAAGGGCTTCTCTTAAAATCCCGCGGGATGGACCCATAGAAAACCCGAGCACTGACGATTTGTACAAGGCCTTGTCGCTGACACCGGACAAGTCCCAAGAAATCAACGAATTCAACGAAACACCGCTGAAAGGGTATTCTTCAGAAGATGGTTCCTGTCAGAGATCATTATCCCTTACCAAGAATGCGTCCAGCGTCGATTCTATGAAGGAGAACTATTGTGACGCAAAGCAAGCGAGAAGAATCAACGAGCATGCACAGAACGTCAAAAAAGCCCTACAGATGCAACAGAGTTCTTCGAGCGATTTATGA

Transcript

ahya_s0148.g28.t2

GTTAATTGGGAGCATGCGCGTTATTATCTGATCGGTTTTTGCCGGATGTTTCAAAAAGCTCAAAGTGAATTATTTATCATCGATAAGTTCAGTAGTCTAAATTTAGGACTGAACAGAGTTAATTATTTTTTACGTCAGCCAAACAATCAAGAAAAACAGCCTGCGAAACCTCAATTGCTGCAGGAGGCGTTCCATCCTCGACTAAATGTCGCATGAACGAAGCTTCGAAACATGAACGAGAATGTCCAAGATTGGGGCGAATTTGTCAACCGTTATACTTCTTGTTCCTCCCGGAATTCCAGCCCGGATAGAGACACAGTCTTTGGCGATGTTAAACGTACTCCTTCGCCGGGTTTGCCGCTGTTCAGTTTAAGCGATAAACACTTCTGTCGAAGAGATAACATTGACCAATGTCTAGCGTATTTAAACCAGGAGTTTGGAGTCCTTGGGTTTTCTTCATTATTCACACCATCTCGCAATGGCAGCGGGCCACCAGACACATTTGACATTGTTAAACTGATCAACAGTACTTATGAACTGTTACAACAACAGCAACGAAGTGCAAAACAACGAACTGACCTCGAGGAGAAAAATCTTCGATCAGAGTGTGATAACGAGCATCTCATCCAAGCACAGAAAAGACTAAAGGAACAATTAGAAGCGGCGCAGCGAGAAATAGCAATGGGGAATGAACGAGAACGCCAGCTTCAGAGCAAACTTTTGAAGACGAAAGAAGATCTTAAATTGGAGAGAGAAGAGTTAAAGAAAACGAAAGCCAATGTGGTGCACTTACAGAAACAGTACGACCACGAGGGGCGGAAAAAAGAACGCGAATTCAACAAACTCAAGGACAGAATTCACCAACTGTTAACTGATAAAAGTCAGGAGAAGAAAGTTGGTTTGGACATCTTAAATTTGGTCAAGAGACCCAGTGGGCAGCGTGCAACGTGGAAAACTGGGACAGCCAAGAATGAAGAAGAAATGTACAGAGTACTAATCACTGGCTATGAAGAAAGGCAAAAGGAGCTGATGGTAGAAAACAATGATCTGAGAGAATCACTTCAAAGTATGCAGACAGAATTGATAAACCTGTTGAATCATCACGATGAAGATCAGAGTGAACACACAGACAATGAGACGGAGGAGTTTGGAGTCCTTGGGTTTTCTTCATTATTTACACCATCTCGCAATGGCAGTGGGCCACCCGACACATTTGACATTGTTAAACTGATCAACAGTACTTATGAACTGTTACAACAACAGCAACGAAGTGCAAAACAACGAACTGACCTCGAGGAGAAAAATCTTCGATCAGAGTGTGATAACGAGCATCTCATCCAAACACAGAAAAGACTAAAGGAACAATTAGAAGCGGCGCAGCGAGAAATAGCAATGGGAAATGAGAGAGAACGCCAGCTTCAGAGCAAACTTTTGAAGACGAAAGAAGATCTGAAATTGGAGAGAGAAGAGTTAAAGAAAACGAAAGCCAATGTTGTGCACTTACAGAAACAGTACGACCACGAGGGGCGAAAAAAAGAACGCGAATTCAACAAACTCAAGGACAGAATTCACCAACTGTTAACTGATAAAAGTCAGGAGAAGAAAGTTGGTTTGGACATCTTAAATTTGGTCAAGAGACCCAGTGGGCAGCGTGCAACGTGGAAAACTGGGACAGCCAAGAATGAAGAAGAAATGTACAGAGTACTAATCACTGGCTATGAAGAAAGGCAAAAGGAGCTGATGGTAGAAAACAATGATCTGAGAGAATCACTTCAAAGTATGCAGACAGAATTGATAAACCTGTTGAATCATCACGATGAAGATCAGAGTGAACACACAGACAATGAGACGGAGGAAAGGGAACCTAGCGAATCAGGATCAATTGAAGAGCTTTCTACAGGTCATTTTCATATGCCATATGACCTAGTTAGGGAAGGAATCGAGAAAAACCTCCGAGAAAAGTGGCGACTATTAAAGTGCCGATTAGAAGAAGCAAGCAAAGTATCCAATAATGGTTCCAATGATCAAGACTGCTCGAAAGAGGTGAACTTTCAAGAGGAAGTTGAGCGGTTGGAAAGACAGTTGGAAAACTACAGACACGTCGTGGAGCAACAAGAAAGCCTTATCGAGTCATTGCAAGGCAAGATTAAAAGTCCGACTAAAGACTCTCTGTTCCTGACCGACCCTGAGTTGTTGGAGGAAAAAGAAAAGTTTTCGTCGGATAGAGAGTTTTTCAATGAGCAACGGGCAGCAATGGAGAACCAAAGAAAACAGTTAACAGATGCTGCGATTAAATTGGGACACGAGAGAAAGAAGTTCGAAGAAGAACGCGCTTCTTTTTACAAAGCACAACTTCTGACTCCAGTAAGAAAGCAGTCGAATGGAGGAAGATCTTCCAAATCACCGGAAGGTCTGCGACTTCAGTTTAGCTCTGCTTCGTTTTCACCGGCTCCAAGAAATCTTTTTCCATCATCGGAGACAAGGGCTTCTCTTAAAATCCCGCGGGATGGACCCATAGAAAACCCGAGCACTGACGATTTGTACAAGGCCTTGTCGCTGACACCGGACAAGTCCCAAGAAATCAACGAATTCAACGAAACACCGCTGAAAGGGTATTCTTCAGAAGATGGTTCCTGTCAGAGATCATTATCCCTTACCAAGAATGCGTCCAGCGTCGATTCTATGAAGGAGAACTATTGTGACGCAAAGCAAGCGAGAAGAATCAACGAGCATGCACAGAACGTCAAAAAAGCCCTACAGATGCAACAGAGTTCTTCGAGCGATTTATGATAGGAAGGTAGAGTAGTGTTGAAGGGCAGAAATACTGGTCGCCCGCTAAGTCCTGTGATGACACAGGTCGGGTACCTTTTCCGACCGTGAATTGATCTCTCAGAAGAAGATTTGACAACTTGTGAAGGTGCTGTTTGTATTGTTGTTCGAAAGCAGGCCTTTGAAAGCAGTGTTCAGAGTAGGTCTTTGTTTTGTAGTTTCCTGGTGAATTGTTGTTTTGCTTTCCCGAAGTCTTATCGGGTCACGGGTCAGGTTGCATGTGACGGTCATACTTGTGTCCCGAGCTACCCTCCTGGGAATTGAGTGCACTCGGTGTAAATAATTATTGTCTTTTCTTTGGTTTTAAACAACATGATGGCTGATCACGTTAGTGAATACGCACTGTAACAACGAAAAGAAGAGAGAGCTTTAAGATTTTAAATCGAGATTTTCGTTTCGTTTAGATGGTGAACCCTGGGATCTAGATTCTCTTAAGTGTGTGACCGCTGACCTCAGGAATTGCTGACCGTTAAATTATAGTCATTGCGTAACGCAACACGCGCGGAGAAAATTTAATTGGTTCAATAAAGTGGATTTTCACGGTGAATAAATTTAACAAGGCTTGTTTTTGTTTCTTTCAACATCATTCACTAGTTGTTAATTCAAAGATTTCTTTTTCAATATTACAAGTTCTTTTCTTAAGGGTGGGCCGAGGGGTACATTTAAAACCCATTTTTCCATCCATTTTGGTATTTTGCGTCCTGTGGAAACTCAACAAGTTTGTTTTTTCAAAAGAATGCAGTTTGCAGAATTAAAGTTTGCGTTTTAGA

Protein

Uniprot

Uniprot term	Description
Q9Y2D8	Afadin- and alpha-actinin-binding protein OS=Homo sapiens OX=9606 GN=SSX2IP PE=1 SV=3
Q8CGZ2	Afadin- and alpha-actinin-binding protein OS=Rattus norvegicus OX=10116 GN=Ssx2ip PE=1 SV=1
Q8VC66	Afadin- and alpha-actinin-binding protein OS=Mus musculus OX=10090 GN=Ssx2ip PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11559	ADIP	Afadin- and alpha -actinin-Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052300	Family	Adhesion and Centrosome-associated Protein	Interproscan
IPR021622	Family	Afadin/alpha-actinin-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46507	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0034451	Cellular Component	centriolar satellite	Interproscan
GO:0035735	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06085	SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala