Gene detail

Detailed information of ahya_s0260.g6.t1 in Acropora hyacinthus

Genomic Location: sc0000260_pilon:258068...270685
NR annotation: XP_029202648.2, uncharacterized protein LOC114966833 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0260.g6.t1

ATGGTTCTGTGCATTATTGTTGGCTGTGGTAACAAGAGTGGAAAAAGTTCACAAAAAAAGGATTCTGTGGTGAAATTTAGTCGTGTTCCGAAAATTGTTAAGAACGAAGGCGAAGTGATAGAGTTGACGACCAGAAGAAGACGAGCATGGATTTCAGCCATAAGTCGCGATGACCTTACGGACGATAAGCTTGAAAATGAAAGGGTTTGTTCTAGGCATTTTGTGTCTGGCCAAGCTGCCAAACAGTGGGACCAATTTGATATTGACTGGGTCCCAACATTACATCTCGGCCACACGAAGAGACCGCACCACCATCTGATTGATCCTCAACTCAATGCTGACAGAGCTGAACGACGGAAGAGGCGACAAGAAATAATTGATCGAGAAATATCAGAAAAGGTGAAGAAGTTGAATGAGCCAGGGGATACTATAGAAAGCATCTTTAGTGAGGTCGAACACACATGTGCAACACAGGAAACTGATGGAAGTGATGAATTACAAGACGACAGAAGTGAAGATGAAGAGATGGGTGAGCTGGAGGAGGAGATGGATGTTGCAGGCGAAAAACTTGTCGAAGACACCGAGAAAAAGCCAGTTCTCGTTGACAAAGATAGCCAGACCTTGGTCTCTGCTTTGACTCAGGAAACAGTTGATGTAGCGACCCAAACAACAGAATTTGATTACTTGTTCTGCAGTGCAACGAAAACACAGCCATTTACGGAAGACTACTTCAAAGATTCTGACGATAGAACTAGATTCTACACAGGATTACCAGACTTCCACTTATTAACTACAACATTTGAATTTGTTTCACCTTATGTGACCAGGAGGACAAAGACACTTTCTCTTTTCCAGGAGTTTGTTATGGTTTTAATTAAACTTAGACTAAATGTACCAAATCAAGACCTAGCTTACAGatattttcaagagttcgagcaggtgctgatgttcacgagcggtttgttggctcaaaagtgcgaaggagcagccaaggcacttatcgctggtatagctactcaagtcaacttgcgggaaaatcttttggacgtggcattggaatgtattaatgaatgcaagagagaggggactacttttcacaaagaaatggcacaggtttttggctcgtatcttaaccttcagacggccatttgcaaaaggttgaccaaggaacttgttgctgtgtgtattgaaaccttgaaaacgaactccacagttacagaactggtcctcgttggtagtgacattgatgatgcaaatgctgctgaagtggttcggctattgatagaaaattcaacgctgacatcgctggacctgtctagtaatgatattggcgaagttgccgctgatgcactagctaaaggactgaaagaaaattcaacgctgaaaacggtcaacttggatgagaatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacactgacatcgctggacttgggtcataatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcagcgctgacatggctgggcttgcgtcataatcgaataggcggcgttggcgctgatgcactggctaaaggattgaaagaaaaTTCAACGCTGACATCGCTGCGTTTGGGACATAATCAAATAGGCCACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCAACGCTGACATCGCTGGACTTGGCTCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCAACGCTGACATCGCTGTACTTGGATCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGATTGAAAGAAAATTCAACGCTGACATTGCTGTACTTGGGTCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCACCGCTGACATCGCTGGACTTGGATCATAATCAAATAGGcgacgttggcgctgatgcactggctaaagggttgaaagaaaattcaacgctgacatcgctgtacttgggtcataatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgatatcgctgaacttgctttttaatcgaataggcgacgttggctctgatgcactggcaaaatggttgaaagaaaattga

Transcript

ahya_s0260.g6.t1

GGCCACTTACTGTACTTATCGATTTAAACTGTGAAGGATCAATATTACATCGTTCGTTATTACCATGGTTCTGTGCATTATTGTTGGCTGTGGTAACAAGAGTGGAAAAAGTTCACAAAAAAAGGATTCTGTGGTGAAATTTAGTCGTGTTCCGAAAATTGTTAAGAACGAAGGCGAAGTGATAGAGTTGACGACCAGAAGAAGACGAGCATGGATTTCAGCCATAAGTCGCGATGACCTTACGGACGATAAGCTTGAAAATGAAAGGGTTTGTTCTAGGCATTTTGTGTCTGGCCAAGCTGCCAAACAGTGGGACCAATTTGATATTGACTGGGTCCCAACATTACATCTCGGCCACACGAAGAGACCGCACCACCATCTGATTGATCCTCAACTCAATGCTGACAGAGCTGAACGACGGAAGAGGCGACAAGAAATAATTGATCGAGAAATATCAGAAAAGGTGAAGAAGTTGAATGAGCCAGGGGATACTATAGAAAGCATCTTTAGTGAGGTCGAACACACATGTGCAACACAGGAAACTGATGGAAGTGATGAATTACAAGACGACAGAAGTGAAGATGAAGAGATGGGTGAGCTGGAGGAGGAGATGGATGTTGCAGGCGAAAAACTTGTCGAAGACACCGAGAAAAAGCCAGTTCTCGTTGACAAAGATAGCCAGACCTTGGTCTCTGCTTTGACTCAGGAAACAGTTGATGTAGCGACCCAAACAACAGAATTTGATTACTTGTTCTGCAGTGCAACGAAAACACAGCCATTTACGGAAGACTACTTCAAAGATTCTGACGATAGAACTAGATTCTACACAGGATTACCAGACTTCCACTTATTAACTACAACATTTGAATTTGTTTCACCTTATGTGACCAGGAGGACAAAGACACTTTCTCTTTTCCAGGAGTTTGTTATGGTTTTAATTAAACTTAGACTAAATGTACCAAATCAAGACCTAGCTTACAGatattttcaagagttcgagcaggtgctgatgttcacgagcggtttgttggctcaaaagtgcgaaggagcagccaaggcacttatcgctggtatagctactcaagtcaacttgcgggaaaatcttttggacgtggcattggaatgtattaatgaatgcaagagagaggggactacttttcacaaagaaatggcacaggtttttggctcgtatcttaaccttcagacggccatttgcaaaaggttgaccaaggaacttgttgctgtgtgtattgaaaccttgaaaacgaactccacagttacagaactggtcctcgttggtagtgacattgatgatgcaaatgctgctgaagtggttcggctattgatagaaaattcaacgctgacatcgctggacctgtctagtaatgatattggcgaagttgccgctgatgcactagctaaaggactgaaagaaaattcaacgctgaaaacggtcaacttggatgagaatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacactgacatcgctggacttgggtcataatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcagcgctgacatggctgggcttgcgtcataatcgaataggcggcgttggcgctgatgcactggctaaaggattgaaagaaaaTTCAACGCTGACATCGCTGCGTTTGGGACATAATCAAATAGGCCACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCAACGCTGACATCGCTGGACTTGGCTCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCAACGCTGACATCGCTGTACTTGGATCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGATTGAAAGAAAATTCAACGCTGACATTGCTGTACTTGGGTCATAATCAAATAGGCGACGTTGGCGCTGATGCACTGGCTAAAGGGTTGAAAGAAAATTCACCGCTGACATCGCTGGACTTGGATCATAATCAAATAGGcgacgttggcgctgatgcactggctaaagggttgaaagaaaattcaacgctgacatcgctgtacttgggtcataatcaaataggcgacgttggcgctgatgcactggctaaaggattgaaagaaaattcaacgctgatatcgctgaacttgctttttaatcgaataggcgacgttggctctgatgcactggcaaaatggttgaaagaaaattgaacgctgaggtttctccgctactaatattggcgaagttgccgctgatgcattggctgaaacattgaaagaaaatttaacCACTGTG

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF05485	THAP	THAP domain	Domain	Interproscan
PF13613	HTH_Tnp_4	Helix-turn-helix of DDE superfamily endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR052410	Family	Dynein regulatory complex subunit 5	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR027805	Domain	Transposase, Helix-turn-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24107	YNEIN REGULATORY COMPLEX SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan