Gene detail

Detailed information of ahya_s0285.g11.t1 in Acropora hyacinthus

Genomic Location: sc0000285_pilon:181577...196895
NR annotation: XP_044182421.1, protein artemis-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ahya_s0285.g11.t1

CCATATTTGATTTTGTTGTCGTTTTTGAAAATTTTTCAATTTCGTTCCTCTTCTGCGCCGAAATAAGGTGATATTTGTTTCTATTTCTACGAGGAAAAGTCAATCTACACAAGGAAAGAAATTATGAGTTCTTTCACAGGAAAATTCAAAGAATACCCTATGATTTCAGCGGATAATTTTGAGAAAGAGAATCTCGGTAGTTTGGCGTTCTTCCTTTCTCATTGCCATAAAGATCACATGTCTGGGCTTGATTCAAAGGCATTTCACACAAGACTTATGGGAAGCAAGTCTGTGTTTCTGTACTGCTCAGAGACAACTGAAAATCTTTTATTGTGTGACCCCTCATACAGCCACCTCAAGAGCCATGTTCATAGCATACCTTTGGAGCAACAAACAATGATTCCTCTTTTTGATGAAAACACAGATGAGGAAAGCTCCATCTGTGTTACATTGCTTCCTGCTGGCCATTGTGTTGGTTCTGTCATGTTCTTATTTGAAGGCCAACATGGAAATGTTCTTTACACAGGTGATTTCCGTTTGTCAGTAGGCGATGTTAAGAGGATACCATTTCTCCATGCAAATGGCAGTATAAAGGATATTAAAAGCATTTACATCGACACCACATTTTGCCTGCCAAAGATGAACTCTCTTCCCACACGGGAACAAAGCAGAGATGCCATCATAGAACTAATAGAGAGGTGGTTTTCTCGTGGTCCCCAATACGTCGTCAGCTTGTTATGCAAAGGAATGTATGGCTTTGAGTATCTGCTTAAGGAAGTGGCGATGCACTTCAAAACCAAGGTCCATATCAGCCCTGAGCGACTGCGCATGTACCGGTATCTTCCAGACATGTTGCCTTATTTCACTACCGATGGTAGGGCTACAAAGATTCATGCCTGCAAATGGCAGGCTAATCGACATACAGATTCCGATCTTCCTTGTGGACAGTCAATCTTCCCCGCTCGTAAGATGAAAGTGCTTCGAATCAAACCCGCAACGATGTGGGTTGCACTGAGCACAGAGGGAATGCCTGCTGACTTCAAGAGATATGACAAGGAACAAAGAGTGTGGCGAGTTGTGCATTCAATGCATGCATCAATGGAAGAGGTTCAAGATCTTGTTGGCTATCTCAAACCTTACCACGCTTATCCAAACGTACCGCCAGCCGGACTGGACACACTGGAAGATGCCTTTGAAAGGCTAAGGGGACTCACTCGACTTCATGAATGCAACTCTTGCAACAAAGACGACTCTGATGAATTGCATTTCAAGGAAATTACACCAGAGCACTGTGTCGAGATGCAAAAACCGCAGCCAAAGACACTCAAGCCATTATCAGGGATTCGGCGGACAGTTACAGACGAGAAAGTCCTAGCACAGTGTAAAGAACTGGGTATCGAAGAGGAGCAATGCTTGGCACCGGTTCCCAAGCGTCGAAGAGGCAAGATTTTGGAAGAGAGAAAGGTCGATTCTTCGCGACAAGTTACGGAAGAGTTGACGTTAGACTTTGAAAAACAATTAATAAGCACTTCCGTAAGTCAAACGCAAGACGTATCGTCTCTTTCAAGCCGTCCCGCACCTCTTTCACTCGAAGATAGCGGAGACGTGAATGAATGGACAGAAAGAGTTGGAGGGGAAGTTCAGATGGAAGAGAAACCTTCAAAACAAAATTTTCAAACGGAATGGAAACATGAGGACATTGGCACAGAACGTAATCAAGGTGGGAAAACCGAGTCTTGCAAAGGTTCCTTGGTTGAAGGTGGCGGGGTCAATCCGTTTGAAAATTCAGATCACTCTAAAACAAAACGTGATGAGGTTAAATTCCCTGAACTTGAGCAACCAAAGTTTCTGTCTCCAGGGACACCTACAAAATCACAATCGCAGGGAGAGGTGGCCGTGTCTAATTTTGATGTCCCTCCCTCCCCTGGAAATGCGAAGCCACGCCCAGAGAGACTGAAATTCCTCCATCAGAGGATTCAAGACGGAGACACGATTAGCATGACAAAGGTTAACGATAAGGGAGCTCGTTAATCAATGGTCCATGCATCTCTCTTTCAATTCAACCAGGCTTGCAGAATCCCAGTAGACTTCGGGTAGGCTCCACTTTTGAAGAGAGAGAACCTATCGGATGAACTACACGCAATACGAGGGGTGCGTGGAAAATTTTCTGCCCTCGTCTCGCGCGTGTAAATGTATTTCGCTCGCTCctttgtcttcacttgacgtcacggcagccatgttgatgtgcagagttatagtgaaaaatgtcttttgggaatttgattctattattatgcaaaacttgagcgacattttgctattgttttgtacaccaacatggccgtctcattacgtgagtgaaaaccaagaatACGCTACTACTTGCAGTCGAAAATGACGGCTATTTGACAGTCATACGAGGAAAAAACCCGTCGTTCGTACCTGCTGTTATACTTGTTTTCTTCATCAGCTCGCCTTTTTCGAACCTCTCTTGATTTTCTTGACCAAATATGGCTTTCTACTCAAGATTGTTACCTTTCTTCGCGTACATTCCAAAGTGGTCTCGCAACTTTTACGGAAAGATTGTGTGACGACTCGAAAGGAATTCTGCTAAAGATCCATATCTAGAAAAGGCCATTTAGCGACTGAGGAGAACTGGGAAATGGTCTATCAATGTCCAGTCTCGCAACCACAGGCCTTTAAACACGCCTGCTCTTGCCAAATTACGTGAAATGGCTTTCTCATTTACACCAACGGTGACTCAAATCACCTCGGTTCAGGGTATTatcgaccttattcgtaaatggctgccaattcattattcttttgtccttgtgcaaattagcctaccaagcctcacattagagcaagaattcttttcagtttagcacatgacaatgaggcttggtaggctaatttgcacgaggacaaaagaataataaattggcagccatttatgaataaggtctatATGTTAACCTATCAACAACTGTATTTGGACTGGTTATAACGTAGGCTCGATTACCAGCCGCTGTTCGGGAAAGGAGCCCGCGTCTCTTCTCGGGGAGGGTAGACCAGACACGAGAGAGCGGCGGAAATCGAACCTAGTTATATCGACGACTATAAAAATTTCACATTTCGTACATTCATCAATAATATATTTATATCTATTTCATTCACGGGCTGTAAAAAATATGAACAATCTAAAAATATTACTTCTACAAATTCACTTCTATTTGTTAATTATTGCCTAGTGACCTAGCCTTTGCGTCAAAAAGAGGCTACAATCGGCCTAATCTTCGTGTAAACCCACTCCATCCTTCATTTCGCTTCTGTCGGGGCTAAAATGGCTCTTGGAGATTTGGTTTAAAGTCAGTCTCAGTTTTGTTTCTGATCCTTACCAGGCCTAAGTGGTTCAAAGCTtggatagaactattcaccctttgaacaactggggccaggtcgctaagcGCGTACAATCTATTAGGGACGGGGTTGCTATCGGCATGCTCCAAATGAACAGGCCATAACCGTAGAGGATTTAAAGCGCTACCTAGAAGATAACTCAATAGACCTACCCAGCGGCCATCTTAAATTCTATGCTTCTGAAAAAAAATATTATGGGATGCTCAGGGGGTAAATTCATGTTTCATGTGGCTGTTACGTTGGTTTTAGTTTTTGAAATTTCCAAACCAGTATGACTTTTTCATGTCCCTTGTTTCAGATGGCAATTTATCTGTGACAAAGGAAATATAAAAATCTGGATTGGAGAAACAAAACCAGATTTTCTTGCACATGTACGTATTTGCCCCCTAAAATAAAAAAATAAAACTTATTCTTGAAGAGATTTACATAGCAGCCAATTAAAACATATTTAGCCCGTTTGCTGACGGGGTCAATGAACTGCATCACGAAGGCATTGTTTCGAGCGTACAAAATGATGTAAAAAAAGTTTTTCATTCGCTAAATTCACCTAACAACGCTCTTACTTGAACGCTTATAAAAACACGGCCAACTAATTTATAGCACAAAAAACTATAATGGCTAAAGGGAGTTATCTTCTTTTAATGCCTCGTTTCCGTGGGCGTGAACATGTTTCGGTCGTGCTAAAACTGGGGCGAGAGGAATAAACCTCTCTCTCTAACTCACATGCCATTTTTTCCGCGACCGAAACACGTTCAGGCCCACAGCAAGGCTTGCTCCTTAGCCTAATTAATTTCTTGCAATTTTTTAAGCCGTCATAAATTATCACCTACTGATTGTGCTGTTTTCGAATTCAAGGTTGAATTTTCCTGAAAGCAATACGATAAGAGCTTTTACCTTTGAATGAAAGCAAATTTCTGAATAAATTCCACTCTTTCGTATCTTTCACAATATAAACACACAAAACACTTTAGAATAAAAAATAAGCGATTAA

Protein

Uniprot

Uniprot term	Description
Q5XIX3	Protein artemis OS=Rattus norvegicus OX=10116 GN=Dclre1c PE=1 SV=1
Q5R6Z9	Protein artemis OS=Pongo abelii OX=9601 GN=DCLRE1C PE=2 SV=1
Q96SD1	Protein artemis OS=Homo sapiens OX=9606 GN=DCLRE1C PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07522	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011084	Domain	DNA repair metallo-beta-lactamase	Interproscan
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23240	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000723	Biological Process	telomere maintenance	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10887	DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein	EC:3.1.-.-	DNA repair and recombination proteins	ko03400	deepkoala