Gene detail

Detailed information of ahya_s0406.g3.t1 in Acropora hyacinthus

Genomic Location: sc0000406_pilon:104667...107325
NR annotation: XP_044174576.1, uncharacterized protein LOC114947487 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0406.g3.t1

atggccacgggatcagaatatacagaggagcaactcaactactacaggatttgttgtattaccactgacgagttaatagacggtctgagaacaatcttcaaacaggaatgggacaaccgttacgcaactatacttggagaatggaaagacgaggccaaaaacggacaagacttcaaaaacggggagtctccacgaaaccaagcaagaaatcatgaactattagcaaccatgatcaatggaaatagagccgaatgggattgcacaatgctgttttacgctatcctgtattccgactgtattgggcgtggtctgaatgcagaagtccggtcaaacgtagatgatctgagacaattccgtaacaaagtctttgctcatatgcctcaaggccagatctctaagcgagagtttcgaagtgcaatcgcccacgtccagggtgcgtttcaagctcttagcctgtccactgtaaagatccaagaaatcagagagcaaactagttttcccaccagccatttgaaaaaggtcttaagagaagatgacaagcttaagcacgaagtcaaagtccttgaagatcaattgcagagtgagaccacgcccttttgcattcttccgccgaagccttcgcacgatgttgccgcgcgaaatgatgaggtggttaaaataactgatgtgttaaaacaactaaaagagaccaacgagagccgactaagctacctctacatctcaggaaatcctggaagtggcaaatctcagttggctggcctggtagcaaagcaaagtttcatggaaagcacgcatgcatttgtgatgactttgaatgctgcaaaccttgacaggcttttagattcatatgtctcttttgctcgacatctcaagtgttcagagtatgcagttaccaatactctaaatgacaaagacctgaagacgcaagagaagatcgcttacataaagtctttagctggtaccaaagtggagctttacgcgtcgtggctgttggtagttgacaatgtcgtcagcatacctgagatgtacgctcatttgccagacacaggaaacagccactggagtaaaggtcaattgctaatcacatgtcaggacaccacttctatcccttcagataacagtttcattaaacaattgtctgtaagcaagggcatggcgccatctgacgccacctccttattggccaccatctccggtattgctgacgatgagacagcgaaaaaagttgcacatgcattagactatcaacctcttgccttagcaagcgccgctacgtttgtaaaactactttgcgaccataaaccatcatcgaacgtgggctggagagactttctagagaaacttgacgaaggccaacttcaaaacactgagacctttctttcaaacacaaatgcaagttatccatattctatgaccactgcgattgcattagctgtggaaaagtcgatgtcatccgacagagttttaaaacacggattcaatgttatttccctttgtgcgccacaaccattaaaccttgacattgtaacaaactatgttcagaaggccgcggagaatggcgatacgaacacagaaggggaatttaaggacaaagatgtgattggtttgaggattcgcaagagctcactcgtgttacttgaagaagacaacggcgaaatctacattcgcatacatctagttgtaagacatgtcatccaacgtcttattaaacaacattgggagactcaacgttttcaagtacttcatgtgttcattttgtctttgaatcaattcatagtagaaaggaaaactgacgattatactgctaatggatttaggttactagttcctcatttgagattcctttcaaagcaagttgaagcttatttcaaagaaaatgacttatttgaagccatcaaaaataagatttctaacttgaaagatgatttaagttcttttattgcctttggtgacatttgcagagtacatttcgacctggaagcagcaaggtgctttgctagtttagctctaaagttagtttcccacgatagcatgcttgatcacgcgtatgctgtaagcgcccatactctcatgggtcaagtacttctccagatgggaacgtttgaggagggaaaacgtcacttcgaactctctctcgatcttcagcttccattgttagggtctgaacatcctcttgtcgcaagttcttataacaacttagcaattgtacttggtgatcaaggtgacctaaagcaagctaaggagtatcatgagcgtgctcttgctattaggcaacaaactttagggcctcaacatcctgatgtcgcgagttcttataacaacttagctactgtacttcaagatcaaggtgacctgaagcaagcaaaggagtattatgagcgtgctcttgctattaagcaacaaactttggggcctcaacatcctgatgtcgcgagttgttgtaacaacttagggtga

Transcript

ahya_s0406.g3.t1

ctaatgtgaTCAATTtggaaatggccacgggatcagaatatacagaggagcaactcaactactacaggatttgttgtattaccactgacgagttaatagacggtctgagaacaatcttcaaacaggaatgggacaaccgttacgcaactatacttggagaatggaaagacgaggccaaaaacggacaagacttcaaaaacggggagtctccacgaaaccaagcaagaaatcatgaactattagcaaccatgatcaatggaaatagagccgaatgggattgcacaatgctgttttacgctatcctgtattccgactgtattgggcgtggtctgaatgcagaagtccggtcaaacgtagatgatctgagacaattccgtaacaaagtctttgctcatatgcctcaaggccagatctctaagcgagagtttcgaagtgcaatcgcccacgtccagggtgcgtttcaagctcttagcctgtccactgtaaagatccaagaaatcagagagcaaactagttttcccaccagccatttgaaaaaggtcttaagagaagatgacaagcttaagcacgaagtcaaagtccttgaagatcaattgcagagtgagaccacgcccttttgcattcttccgccgaagccttcgcacgatgttgccgcgcgaaatgatgaggtggttaaaataactgatgtgttaaaacaactaaaagagaccaacgagagccgactaagctacctctacatctcaggaaatcctggaagtggcaaatctcagttggctggcctggtagcaaagcaaagtttcatggaaagcacgcatgcatttgtgatgactttgaatgctgcaaaccttgacaggcttttagattcatatgtctcttttgctcgacatctcaagtgttcagagtatgcagttaccaatactctaaatgacaaagacctgaagacgcaagagaagatcgcttacataaagtctttagctggtaccaaagtggagctttacgcgtcgtggctgttggtagttgacaatgtcgtcagcatacctgagatgtacgctcatttgccagacacaggaaacagccactggagtaaaggtcaattgctaatcacatgtcaggacaccacttctatcccttcagataacagtttcattaaacaattgtctgtaagcaagggcatggcgccatctgacgccacctccttattggccaccatctccggtattgctgacgatgagacagcgaaaaaagttgcacatgcattagactatcaacctcttgccttagcaagcgccgctacgtttgtaaaactactttgcgaccataaaccatcatcgaacgtgggctggagagactttctagagaaacttgacgaaggccaacttcaaaacactgagacctttctttcaaacacaaatgcaagttatccatattctatgaccactgcgattgcattagctgtggaaaagtcgatgtcatccgacagagttttaaaacacggattcaatgttatttccctttgtgcgccacaaccattaaaccttgacattgtaacaaactatgttcagaaggccgcggagaatggcgatacgaacacagaaggggaatttaaggacaaagatgtgattggtttgaggattcgcaagagctcactcgtgttacttgaagaagacaacggcgaaatctacattcgcatacatctagttgtaagacatgtcatccaacgtcttattaaacaacattgggagactcaacgttttcaagtacttcatgtgttcattttgtctttgaatcaattcatagtagaaaggaaaactgacgattatactgctaatggatttaggttactagttcctcatttgagattcctttcaaagcaagttgaagcttatttcaaagaaaatgacttatttgaagccatcaaaaataagatttctaacttgaaagatgatttaagttcttttattgcctttggtgacatttgcagagtacatttcgacctggaagcagcaaggtgctttgctagtttagctctaaagttagtttcccacgatagcatgcttgatcacgcgtatgctgtaagcgcccatactctcatgggtcaagtacttctccagatgggaacgtttgaggagggaaaacgtcacttcgaactctctctcgatcttcagcttccattgttagggtctgaacatcctcttgtcgcaagttcttataacaacttagcaattgtacttggtgatcaaggtgacctaaagcaagctaaggagtatcatgagcgtgctcttgctattaggcaacaaactttagggcctcaacatcctgatgtcgcgagttcttataacaacttagctactgtacttcaagatcaaggtgacctgaagcaagcaaaggagtattatgagcgtgctcttgctattaagcaacaaactttggggcctcaacatcctgatgtcgcgagttgttgtaacaacttagggtgacctgatgaaagcaaaggagtattatgagcgtgctct

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan