Gene detail

Detailed information of ahya_s0408.g1.t1 in Acropora hyacinthus

Genomic Location: sc0000408_pilon:82526...85011
NR annotation: CAH3147228.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ahya_s0408.g1.t1

ATGCCGAGACAAGCGGAGGAAAAGCTTGAATATCAAGACTTTTTTAACTTTACTCTGACTTCGCTGAGGGATTTTTTGGCACTTAGAGGATTGAAACAGACAGGCAAAAAAGCCAAACTTGTGGCGAGAGCATTTGGCGCCTACGAGCTTAAAGTACCTAAGAAGTTTTCTCAAGAAGAAATTGACAGGAAATTGAAGGAAGAGTACCAACAGAGACTGAAAAAACATCGAATAAACACCGACCCCAATTCCATTCGGAAAGAAGACTGGAAGGACAACGTTCATGAATGGCCACATATAGATGATGGAATGCTTTTCAGCTACATCTTAAGAGTGAAAGCAGTTGATGTAGAATACATTGGTAAATACAAGGACCAAAAGGCGTATTCCTATTGGCTTAGTGGCTTTGTAGACACTGTATACCATGCTTCATGCAATGACAACTTATTGTTTTTGAAAGCATACGTCTCTCCTTCACAAAGACTAAGCGATGACCCACATAATGTGTGGGTTTGCACTGAGGGACCACAGGATAAATCAAAAATCCTTACGTCATGGTGCTCCTGTATTGCAGGAACCAGTGAGGTATGCAATCATGTAATTGCCTTATTATATAAAGTGAACTATGCTTTAAAAAAGGGCTATATCTCACCAGCCTGTACAAGCATCCCTCAAGGCTGGAACAGAGGAACAAAGAAGGAGGTGGTACCAGGCCAAATTAGAAATCTAAAATTCATTAAACATAGGAAGACAAAAAAGGAAACTAATAGAGATCCTGCCATAGAGCAAGAACTCAGGGAACACTTTGATCCAAGGAAACCTTGCGACAGAGTGCTAACTAATGAAAGAGTATCTGATTTGCTTAGAAAGATCAAAGATTGTGAGCCATCATCTTGTGTCCTCAATTCCATTGAACATGCTAAAGATGATGGCCTTCCTCGACCACTTAAAGAGAAAGCCTTAGCATTCATGTCTGTCAAAACTAACAAGAGCCAAAGCTGTGAAGAAATAGCTTCTTCATTTCTGCAATATTGTCAAATGACAAATGATGAGGTGAAGAGAGTAGAAATTGAAACAAGAGGACAAAGTGGCAATGAGATGTGGTTTGATCAAAGGGAAGGCAGAATTACTGCCTCAAACTTCCACACATATCACACGAAGATGGAATCAATTTTGAAGTCTAGAAAGAGGAGCAAAAGTACATATACCCCTCTGGTATTCAACATTTTGAACAAAAGTGATGACATTTCTCACTTGCCTCAAATTAAGTGGGGGATTGAACATGAAAAGGATGCAATTAAGTCATTTTTGTCTGATGTGGCATCTAAACATGCAAATGGAATGAATGGGTTTAAACAATGTGGTCTGTTTATAAAGCCTGATTATGCTTTCCTTGCCGCCTCACCAGATGGTTTGTTTGTTTGTGACTGTTGCAGTCCAGCTATACTTGAAGTGAAATGCCCTTTCTCGGTCAAAGAGGAAAACATCAATTTGAAAGCTACCTACAAACGTGTCGATTTTTTGGAGGAAGTTGATGGGAGCCCTAGATTAAAGCACACTCATAAGTACTACACCCAGATGCAGGCTCAAATGTGGGTGACTGGAACAAATCATGGGTACTTAATTGTTTGGACAAAAGTACACAAGCCATTGTATGAAAGAGTGGAGTTTAACAGAGAATATTTTAGAGTGGTTCTAAACAACATCACTTTATTTTACAAAACATATGTCTTACCAGTTTTGTTGGGGTACAGGGATATCTACCAGTGCCCAAAGTGTGACAAAGTTATACTGGAAGAACCAGAGATCACTGACATGTCAGTTGAGAACAGTGTTTGTTGTGATACCTGTAGCACATGGTGGCACTTACCATGTGCCAATCTCTTGGAGGATGCTGCAGAATCACTGGAGTCATGGATGTGTCCCAGCTGTCTGGTTGAGGTTGCAGACAGTCACTCTGACAGTGATAAGGATTTTGATGATGTGCCCACCACTTGTACTTCTTGTGACATTGAAATGGATGTCAGAGACAGTGTAACTACAACCTTGGATAATGCTATACAAAGTAATAGTAGTTTGCATGTACTGGCTGACCCTGTTGTGTTATGCAGTGTATGTTCACTTCAGAATATCCCTGTTGGTCAAGAACACATTTGTACCATTTGTTTCAAACGTGTTCATGCATGGTGCAGCAACCATGAGGACATAACCAGATCATCAGACTTAGTATGCAAATTGTGTCACCAATGA

Transcript

ahya_s0408.g1.t1

TTAAAGGGTGCAAAACGACTGGGCCGAGTGCGCGGCCAAACATACTCTGTACCGTAGAAAGTTGCTTGCTGTTCTGTGTCATTTTCCCTAGTTTCATTGATTTTTTAACGTTCAGAGTTTTTGATATTATTCAAAAGGCATTAATTGTCAAACGTGAGTATTTTCTACGTTTTGGTCGATGCCGAGACAAGCGGAGGAAAAGCTTGAATATCAAGACTTTTTTAACTTTACTCTGACTTCGCTGAGGGATTTTTTGGCACTTAGAGGATTGAAACAGACAGGCAAAAAAGCCAAACTTGTGGCGAGAGCATTTGGCGCCTACGAGCTTAAAGTACCTAAGAAGTTTTCTCAAGAAGAAATTGACAGGAAATTGAAGGAAGAGTACCAACAGAGACTGAAAAAACATCGAATAAACACCGACCCCAATTCCATTCGGAAAGAAGACTGGAAGGACAACGTTCATGAATGGCCACATATAGATGATGGAATGCTTTTCAGCTACATCTTAAGAGTGAAAGCAGTTGATGTAGAATACATTGGTAAATACAAGGACCAAAAGGCGTATTCCTATTGGCTTAGTGGCTTTGTAGACACTGTATACCATGCTTCATGCAATGACAACTTATTGTTTTTGAAAGCATACGTCTCTCCTTCACAAAGACTAAGCGATGACCCACATAATGTGTGGGTTTGCACTGAGGGACCACAGGATAAATCAAAAATCCTTACGTCATGGTGCTCCTGTATTGCAGGAACCAGTGAGGTATGCAATCATGTAATTGCCTTATTATATAAAGTGAACTATGCTTTAAAAAAGGGCTATATCTCACCAGCCTGTACAAGCATCCCTCAAGGCTGGAACAGAGGAACAAAGAAGGAGGTGGTACCAGGCCAAATTAGAAATCTAAAATTCATTAAACATAGGAAGACAAAAAAGGAAACTAATAGAGATCCTGCCATAGAGCAAGAACTCAGGGAACACTTTGATCCAAGGAAACCTTGCGACAGAGTGCTAACTAATGAAAGAGTATCTGATTTGCTTAGAAAGATCAAAGATTGTGAGCCATCATCTTGTGTCCTCAATTCCATTGAACATGCTAAAGATGATGGCCTTCCTCGACCACTTAAAGAGAAAGCCTTAGCATTCATGTCTGTCAAAACTAACAAGAGCCAAAGCTGTGAAGAAATAGCTTCTTCATTTCTGCAATATTGTCAAATGACAAATGATGAGGTGAAGAGAGTAGAAATTGAAACAAGAGGACAAAGTGGCAATGAGATGTGGTTTGATCAAAGGGAAGGCAGAATTACTGCCTCAAACTTCCACACATATCACACGAAGATGGAATCAATTTTGAAGTCTAGAAAGAGGAGCAAAAGTACATATACCCCTCTGGTATTCAACATTTTGAACAAAAGTGATGACATTTCTCACTTGCCTCAAATTAAGTGGGGGATTGAACATGAAAAGGATGCAATTAAGTCATTTTTGTCTGATGTGGCATCTAAACATGCAAATGGAATGAATGGGTTTAAACAATGTGGTCTGTTTATAAAGCCTGATTATGCTTTCCTTGCCGCCTCACCAGATGGTTTGTTTGTTTGTGACTGTTGCAGTCCAGCTATACTTGAAGTGAAATGCCCTTTCTCGGTCAAAGAGGAAAACATCAATTTGAAAGCTACCTACAAACGTGTCGATTTTTTGGAGGAAGTTGATGGGAGCCCTAGATTAAAGCACACTCATAAGTACTACACCCAGATGCAGGCTCAAATGTGGGTGACTGGAACAAATCATGGGTACTTAATTGTTTGGACAAAAGTACACAAGCCATTGTATGAAAGAGTGGAGTTTAACAGAGAATATTTTAGAGTGGTTCTAAACAACATCACTTTATTTTACAAAACATATGTCTTACCAGTTTTGTTGGGGTACAGGGATATCTACCAGTGCCCAAAGTGTGACAAAGTTATACTGGAAGAACCAGAGATCACTGACATGTCAGTTGAGAACAGTGTTTGTTGTGATACCTGTAGCACATGGTGGCACTTACCATGTGCCAATCTCTTGGAGGATGCTGCAGAATCACTGGAGTCATGGATGTGTCCCAGCTGTCTGGTTGAGGTTGCAGACAGTCACTCTGACAGTGATAAGGATTTTGATGATGTGCCCACCACTTGTACTTCTTGTGACATTGAAATGGATGTCAGAGACAGTGTAACTACAACCTTGGATAATGCTATACAAAGTAATAGTAGTTTGCATGTACTGGCTGACCCTGTTGTGTTATGCAGTGTATGTTCACTTCAGAATATCCCTGTTGGTCAAGAACACATTTGTACCATTTGTTTCAAACGTGTTCATGCATGGTGCAGCAACCATGAGGACATAACCAGATCATCAGACTTAGTATGCAAATTGTGTCACCAATGATAAAAACAGTCTTTTGTGAATGAATGGCTAGTTCCTCTATTAAAAGACACAAGAACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47526	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan