Detailed information of aint_s0005.g14.t1 in Acropora intermedia

Genomic Location: sc0000005_pilon:292592...330555
NR annotation: XP_029187764.2, LOW QUALITY PROTEIN: collagen alpha-2(I) chain-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O46392Collagen alpha-2(I) chain OS=Canis lupus familiaris OX=9615 GN=COL1A2 PE=2 SV=2
Q28668Collagen alpha-2(I) chain (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=COL1A2 PE=2 SV=1
P08123Collagen alpha-2(I) chain OS=Homo sapiens OX=9606 GN=COL1A2 PE=1 SV=7

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF00095WAPWAP-type (Whey Acidic Protein) 'four-disulfide core'DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036645Homologous_superfamilyElafin-like superfamilyInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR008197DomainWAP-type 'four-disulfide core' domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0030414Molecular Functionpeptidase inhibitor activityInterproscan

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