Gene detail

Detailed information of aint_s0016.g8.t1 in Acropora intermedia

Genomic Location: sc0000016_pilon:209426...212140
NR annotation: CAH3132108.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0016.g8.t1

AGAATTTTTAACAATAATTCGGAAGTTGATCCTGACTGCTACAAACAATTGATATCTATAATGTTGTGGTTTGACAACTGGTATAGTGAGGTTGAAAGAAACAGTTTGCAATCAGCCAGTGCTCTAAAAGACCACTGGAAAGAATTCATACCACGCATAACTTACAAAGCTCTCAAAAGAAGTATTCGAGCTTTTCTTGGAATTGTTCAGTATGTGCAGATGCACCATCCAGAAATACACATTATACCCAAGACTATGTGCCAGGATGATGTGGAAAATTACTTTTCATTACAACGAGCCAGGATATCAGGTGGAAAACCAACCACATTACAGTTTTTTGAGTCATCTGCATCCCTTGAAACTGAGCTTCTTCTGTCTTCAGAAATGAAAGAGCTACAAGGGAATTTTGGCTCTTATGATTTGACAGCTCTGCCCAATCTTGTTTCACTTCCACTATCAAAAGAAAAGCTCTCATCTGGTAAAAACACAAAATTATTTATTGAAAAAGAAGGGTGGGAATTATGTGCCCATAATCTAAGTTCAGAGAGTGTTATTCATGAAAGGTGGGAATTTGATGAAACCTTTCACAATGCTGCAGACAAGCAGCAGCTGTCTAGACATGTTAAACAAACAGTAGAATACATAGATCTTTTTTCGCCAACTACAATTTTAAGAACTTCACAACCCACACTGACTGCCTTGAATGCGAAACAGAACCATCACCACGTTTTATTATTTGCCAGAAAACTTGACTTCTTAAGATCTTCTTTCTTTTCTGGCAAATGGTCTCCTACATCACTTCAGGAAGCAATAGAAAGACTAAAGgttttccatgacctgtacgaaccctgTCCACCCCAACATGAAGAGGATGAGTCTGCAGTTCGACAAATGCTGAAGAAATTCCAATCAAAACAGGACCCACGAAAGACATCATCCACACCCAAACCCTCAGACACCTGTTTCCGTTGCCACAAGCTAGGTCACTGGGCAGCTGAGTGCCCAGACGGACATGAAGCAGAGTGGCTGGCAGAGCAGAAGTGTTTCGCTTGTGGTCAGCAAGGCCACATACAATCAGCATGCCCCAAGAAAAGTGACAAACAACAAAGTCTGAAGTCTAAAATCATACAAAATAGGCCTCCTACTGTTAAGAACACATGGTATCCTTCTGGTACATCTCTTGCAAAGCTGTTAAGCACTTTAACAGCAAAACCTCTTGATGATTTTACCTGTTATAAACAACTTTCTACATCACCCAGGTTCTATAAACAAAGGAGTGTTCAATGGTTTAATTCACGCAAAGGGAAAATCAATGGAAGCAAGGCTACAACTGCCCTTGGATGGTATGGCAAAAGGGCAATGCTTGACTACTGGAATCAACTTTTTAGTGATTTGCATGGCTTTCCAACTTCAACAAGTGAATCAAACCTAGCTATGTTATGGGGATCTATTAATGAAGATAGTGCTCTTGTCACTTACCTTAAAAACTTTTTCCCGAAAGACAAAGATGGAGTGGTTATAAAGGAAACTGGAGTTTGGTTTTTAAAGGTTGAAAACAACCAAGATTGGCTAGGATCCTCTCCAGATGGTATAATTGAGCGAGATGGGACTTTAAAAACTGTCATTGAAATAAAATGCCCTTACATGGGAGGAAAACCTATTCCTTACAAAAATGTTTGCATAAATCACATACCCCAAATCATGTTAGGAATGTTCTGCACATCAACACAACAATGCCACTATGTAGCCTGGACTCCAATTGGTACAAAAGTCTTCCTTATAGAAAGGGATGATGCATACATAGAATTACTTCTAAATTACTTGTACAAATTTTGGGAACTGGCCTCTTGCAAAATTGAACCAACATGGCATGAAGAATCATGTCTTTGGCTTGAAGCAAAAGAGTAAGGAAATTGCACTCAAAAGCCCCTGCTTAAGTTTTATTTCAAATTCATTGGTAACACCAAATGCTCTTTCTCATGTACATCTTAAGAATTTTGCAGGTGTGGCTAATGAAAAGCCACTAAAACCAAAAACATTAACGCAGAAATGCAAGGGATGTAAAGAAGATGAATGGAGGTGTAAACTTAATCCATGCGAGGTACGGATAAAAAGGAAAACCAATGCCTCAGCCTTATAACAGACATCTTACCAGTCTTACAAGTATGGCTCTAATGGAATACATAATAGCTGTCACCAAGACACTTTTCTTGAAGGAACTTATCATGCATTCAAGCGTCAATTAAATTGCCCATCAAACA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR051703	Family	NF-kappa-B Signaling Regulator	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46609	EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan