Gene detail

Detailed information of aint_s0025.g13.t2 in Acropora intermedia

Genomic Location: sc0000025_pilon:263246...267083
NR annotation: XP_029203999.1, transcription factor Sp9-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0025.g13.t2

GTCAACCAAAGGGCAAATACTTCTCAAAATCGCAAGGAAAGATCAGCCGCGGAACTCACAGTGAGGCCATTGAAGACATTAACCGCTCGTTATCCCTCTTTGATGCTTCTGAATCTGTTCAGGCTCAAACCGCAAAGCGACGGCCCCTTTGATCGCAGACAAACTATCAGCCCAAGGAATACTCGTAGGGCGGACATAGTGATAATCATCTTTTCGACAAAATACCGGCCGTTGAAGCCCAGTATAAAACCGAGCTCCAATCTATGAACAAGAGGCTTTCTTGTCAGGAGTCAGACAATCAAGTACAACCCAGGCGGACACCCCTGGCAATGCTAGCAGCGACTTGTAGCAGAATCGGACAACAAAGTCCGCCACCGGTCCCCGACGTGACAATGGCAAAAGGATTCTATCAGTGGAAACAACCGAGCTCTCTGCCTCTACAGCGCACAAGATTAGCTGATGGCTCCCTATATTCCAACCTGCCATCAGCTTTTATGCCAACGAGTGAATCCTTAAGTGCTCAAAACCACGACAGTTTTCTTCCCAGTCAGAGCTACTCAACCGGCCATAATTCGCTCACTGATCCATTGGCTCTGGCCTCTGTGAGCCGCGTACATTCAGCTTCTGTTGAAGCGTCCATGTATCCACGCATGCCTCATCCTTATGACAGTTCGCCATGGTTTAAGTCGTCCATTGAGCCGCGTGCTCAAGCTACAGCACGACAGGCGTTTTGGGAAGTTCACGGTAATCCAACGTGGCTAGATTCAAGCGTGTCTGGCAGCTCATTTCATCCATCTTTGACTCATTTCACAGGATTACCTCACGAATACTCCACAGGAAGTTTATCAATACCCACTGCGGTTTCCGTGGCGAGTCACCCTCACTTTCTACCCCCTCCCTGTCTTGGATCGGATGCTATGAAAGCTTCGCTCCCAACTTACATAGATGGACCATCATATTTCCCCGGCACGTCAGGGTTATTGCCTTCAACACAAAGCGTAACAACACGGACGACTCGACGATACACGGGTCGAGCGACATGCGATTGTCCAAATTGTCAAGACAACGAGAGACTCAGTGCAACTGGGGCGCCTTTCAGAAAGAAAACCCAACACATTTGTCATATTCCTGGGTGTGGAAAGGTTTACGGCAAAACGTCGCACCTAAAGGCTCATCTTCGATGGCATACTGGTGAGCGGCCATTTGTATGTAACTGGTTGTTTTGCGGCAAACGCTTCACACGCTCTGACGAACTGCAGCGGCATCTTCGTACGCACACGGGCGAGAAACGATTCACTTGTCCCATCTGCAATAAACGATTCATGCGAAGCGATCACCTGGCCAAACACGTTAAGACTCACAATAATGACACCGTGAAGAAAGGAGAATCGGAAAAGGACGAGAAGGAGGAAGGCAAAGCTGTCAACATCGGCGGCGACAGTGAACCTTCTTGTAACACGTCTGAAAATATCGAGATTAAGAAGGTTGCATAGTCTCGGCTGACAATACAATGGCAAAAGAAAGTAAGACACTTATCATAAATTCAATAATTATCTTCCATCGGATGAGAAACCTTTGAAATTTCAAATGAAACTCTTGAAAGGCCTTTGTGAGGGGCGAAGATAAGATTCTCTGTCGAAAATGCTGTATTTGTTTGACTTCGGTGAAGTAAAAAAGGTATACAATTTCCAAAGATGAAGATATTACTTTCAGTGAAACAAACCCTTCTGGTGCCTTACTAAACTCGTCGATTGAGAATTTTAAGGCTCAACGAGTGGCAAACATTTCCTATGCCGTGAAATCTTTCCTGATGTGAAAGCACTTCTGAATGTAATGAAGGGACTAACTCTTTGGTGACAAGCGCAGAAATCGTTTTCATGGTATAGTATCACTACAGATCGAAGCCTGTTGTATATTTAACGTCAGCAGTATGTTTTAAGTTATTTAATTGAACGTGAAAACTCTTTGAACACAAGGTTGGCTTATTTACTATTGAAGTGTACATAAAACTCAAGAAATTTATTGAACTAAGCCGAACTTCAAACACTAAATTAAAGAGTACTGTTTTAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q0VA40	Transcription factor Sp9 OS=Xenopus tropicalis OX=8364 GN=sp9 PE=2 SV=1
Q6NW96	Transcription factor Sp9 OS=Danio rerio OX=7955 GN=sp9 PE=2 SV=1
P0CG40	Transcription factor Sp9 OS=Homo sapiens OX=9606 GN=SP9 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan