Gene detail

Detailed information of aint_s0030.g31.t1 in Acropora intermedia

Genomic Location: sc0000030_pilon:525067...543356
NR annotation: XP_029197269.2, uncharacterized protein LOC114962457 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0030.g31.t1

ATGCCCACCGGTGATGAACAAGGTAACAGGATGTCTTCAGACAAAGGCAAGCAAGAGCTACAGCAAGCCTTGTTAGATTTGCTAAGGGAAGACCCTGACATCTTGAATAATGTTGTGAGACAAACTGCTTGTAACAAAGATGAGAAAAAACAGGAAAGCTCTTCAGCATCTGGAAATAGTTACCAGTGGCAAACATCAGACAGTGATGATGAAATTGACCGTGCTTGGCCTACTGCCACAAACAGTATGACACCTAGAGAAGTTCACAGGTGGCGACGCAGTCTTTTTTCAGTTTACGTCGGTAACTTACCTTGCAACATGACAAAGAAAGAGCTTGTGCAATTGTTTAGTGAAGTTGGCAATGTGCAGGATGCCCACTTGCAAGCAGGAAAATCAAGAGGGTTTATCTTTGGGTTTGTAAGATTCCTCACTTCTGATGAATGTCATGATGCTATCTCCATGTTACATGGGCGTGTGCTTGGAAACAAAGCGATTATTGTGGAATATGCTGCTGAAACCAAAGATAAGTTGGAACGCAAAAAAGAGAAAGACAGGTTGTTAAAAGATGACAACCCAAGGGTGGAACCATACCACAGAATGTCTGATGCAGAAGCTCAAGAGAAAATGATGTTATGGAAACTAAGGAGTTCAGTTTCAAGACAGATGCCGTCTGTCAGAGGAACTGATAAAGCCATTGTCACCATGGAACAAGAGAGCAATGAGGAAATAATGATGAATAAGATACAGGAAATAGTTAAAAAAGTAAGCTGCCTTCCATCAGGCATCTGTGCAGAAACATCAGGTGCAGAGGTTTCTGAGCACTCTCCTTGGATTCTGAGAGAGTTAAACAGAAAGGACCAAGTCATCAGTGAAGCTGTATCAAGATCTGCAGACAGTAGGGTGCATAACATTTCAAGTAGCAGAGATGATGTCCAAACTATTGTATCTGGAGTGGCCTTAGATAAGCATGTAGAGGAAAAGGAAGTCAGCAACCAGAATGGCAAATTCAGTGATAAATTGACATCAAGAGATTTTCTGTGGAGAAGTGCAAAGCTGGAATCAGAAAGCAGAGAGCTTGACACAGTGAAGAACTCTGCAAGTCACGTACCACTCTGGGATTTTTCAGTCACTCAGGCTGGTAATATTGCTACAGAAAGCAATGTTTCAGAACTGTTGGCACAGGATCAAAACCAAAGTCCAGAAAATCAGGATTTAAAAAGGATACAATGTGAAAATGACACATATAGGGAGCATATCAAGTGGAATACATGTAGATCTGGAGGAACAATTGAAGATGTTTTGTCTAAAGAGGAAAGAATGGACCAAGTGACCCAAAGAGATGGAGAAATTTTCGTCACAAGAGAAAGATTTGATGCATCAAGATTTCCTGACCATGAAAAGGATGACACCTTGGATTGCAGCAAGGAAGCTGCATCTAGCATGTCTGTGCCCTTAGATAAGCATTTAATAAAAATTGATGATTGTAATCACTGCAATGCAGTTGAGGGTCCATTCAAGGAGAGTTCTGTGATACCAAGCATTTCGTTATCTCCAAATACAAGCCTAGAATCAGCAAGTGAGATAGAAATGAACTTAAGATCTCTAAAATCTTTCCAGGACTGTCACATTAGAGAAAGTAATGTGGTAAAACCTTTAAAAACCAATAGTCCAGAAAAGTCAGATTTGAAAAGGATACAGCGTGAAAATGACAGTTTACGGCAGAACATCAACTGGAACAGACCTGAAGGAACCACTGAAGGTGCTCTTTCCAAAGAAGAAAGGGATTCGCTCAAAGCCCAGATTCATACTAAAGAAGTGCAGTTACAGAAAGAAAAGGAAATCACTTTGGCCAGAAAAGCTGAGCAAGAAATTTTGTACGAAAGAGAAAAACTAGAGGCAGCGTTTGATCCACAACTGCAGAAGGAGCTTGAACGCGAAAAGAAGCTAAGAGAAATCAAGACCAAAGTCTGTTTGGCCAAACTGTCAAATGAGCTTTTGAAACTCTATTTGAAGCTTAATGGAACAAAGGAGAGCTGA

Transcript

aint_s0030.g31.t1

TTCCTCCACAGCAGAGTTTGTCCACAGCTTGTGCCAAAATTCTGCATGTGAAGACGAAACTAGCTTTCAGGATATTAACTGTGGCAATCACAGTTTTCGAAAGGCAGGTGATACATATGCAAGAAGGCATGCCCACCGGTGATGAACAAGGTAACAGGATGTCTTCAGACAAAGGCAAGCAAGAGCTACAGCAAGCCTTGTTAGATTTGCTAAGGGAAGACCCTGACATCTTGAATAATGTTGTGAGACAAACTGCTTGTAACAAAGATGAGAAAAAACAGGAAAGCTCTTCAGCATCTGGAAATAGTTACCAGTGGCAAACATCAGACAGTGATGATGAAATTGACCGTGCTTGGCCTACTGCCACAAACAGTATGACACCTAGAGAAGTTCACAGGTGGCGACGCAGTCTTTTTTCAGTTTACGTCGGTAACTTACCTTGCAACATGACAAAGAAAGAGCTTGTGCAATTGTTTAGTGAAGTTGGCAATGTGCAGGATGCCCACTTGCAAGCAGGAAAATCAAGAGGGTTTATCTTTGGGTTTGTAAGATTCCTCACTTCTGATGAATGTCATGATGCTATCTCCATGTTACATGGGCGTGTGCTTGGAAACAAAGCGATTATTGTGGAATATGCTGCTGAAACCAAAGATAAGTTGGAACGCAAAAAAGAGAAAGACAGGTTGTTAAAAGATGACAACCCAAGGGTGGAACCATACCACAGAATGTCTGATGCAGAAGCTCAAGAGAAAATGATGTTATGGAAACTAAGGAGTTCAGTTTCAAGACAGATGCCGTCTGTCAGAGGAACTGATAAAGCCATTGTCACCATGGAACAAGAGAGCAATGAGGAAATAATGATGAATAAGATACAGGAAATAGTTAAAAAAGTAAGCTGCCTTCCATCAGGCATCTGTGCAGAAACATCAGGTGCAGAGGTTTCTGAGCACTCTCCTTGGATTCTGAGAGAGTTAAACAGAAAGGACCAAGTCATCAGTGAAGCTGTATCAAGATCTGCAGACAGTAGGGTGCATAACATTTCAAGTAGCAGAGATGATGTCCAAACTATTGTATCTGGAGTGGCCTTAGATAAGCATGTAGAGGAAAAGGAAGTCAGCAACCAGAATGGCAAATTCAGTGATAAATTGACATCAAGAGATTTTCTGTGGAGAAGTGCAAAGCTGGAATCAGAAAGCAGAGAGCTTGACACAGTGAAGAACTCTGCAAGTCACGTACCACTCTGGGATTTTTCAGTCACTCAGGCTGGTAATATTGCTACAGAAAGCAATGTTTCAGAACTGTTGGCACAGGATCAAAACCAAAGTCCAGAAAATCAGGATTTAAAAAGGATACAATGTGAAAATGACACATATAGGGAGCATATCAAGTGGAATACATGTAGATCTGGAGGAACAATTGAAGATGTTTTGTCTAAAGAGGAAAGAATGGACCAAGTGACCCAAAGAGATGGAGAAATTTTCGTCACAAGAGAAAGATTTGATGCATCAAGATTTCCTGACCATGAAAAGGATGACACCTTGGATTGCAGCAAGGAAGCTGCATCTAGCATGTCTGTGCCCTTAGATAAGCATTTAATAAAAATTGATGATTGTAATCACTGCAATGCAGTTGAGGGTCCATTCAAGGAGAGTTCTGTGATACCAAGCATTTCGTTATCTCCAAATACAAGCCTAGAATCAGCAAGTGAGATAGAAATGAACTTAAGATCTCTAAAATCTTTCCAGGACTGTCACATTAGAGAAAGTAATGTGGTAAAACCTTTAAAAACCAATAGTCCAGAAAAGTCAGATTTGAAAAGGATACAGCGTGAAAATGACAGTTTACGGCAGAACATCAACTGGAACAGACCTGAAGGAACCACTGAAGGTGCTCTTTCCAAAGAAGAAAGGGATTCGCTCAAAGCCCAGATTCATACTAAAGAAGTGCAGTTACAGAAAGAAAAGGAAATCACTTTGGCCAGAAAAGCTGAGCAAGAAATTTTGTACGAAAGAGAAAAACTAGAGGCAGCGTTTGATCCACAACTGCAGAAGGAGCTTGAACGCGAAAAGAAGCTAAGAGAAATCAAGACCAAAGTCTGTTTGGCCAAACTGTCAAATGAGCTTTTGAAACTCTATTTGAAGCTTAATGGAACAAAGGAGAGCTGAAAGGAAAGTGGGACGTTCCTCAACCAAGGGTTCGATGGAAACTTTGGAGAGGATAAATGATACGTTCATTGGATACCTTTATGTAGCGTCGGTCAAAGATCTTGTTGGTATAAACACACTAAATTGATAGTTTGACCGCGGAGACTTGTGGTGTAGCATCGCTGACATGCGCCTGAAAAAGTAGTCATAGTAACCATCATGACGAATGCAACCACACTGAACATTGATATGatgtggcgacaacatcaatgacgcactcgcctaatggctcgtgtgccttgccaccttttggttctcaccacattttggcgtattctgtgatcaattactgaacagactcacggcaacatgaaatctactcgttaaACAGTCGAGAGTTTGCATTTTACGTTTTTCCTGAAATAAACTTGAATGGATTTTTGCCAGAGTAACATTAATTTTATTGAATTCAATGACTATACCGAAAAAAAACAGAAGAAAACCTCAATTAATACATTTCATATCCACAATCATCCGATCCTCCAAAAACCTTTCGTAATCTGACCTGGttttccctcgtggatgtgtcctcgagttttcgcgaaaatgtttatgcagattgtcactcctgcgtactagaagttcgatctagttagccaatgagggtggaacacactgacaagtgcataaagtaaacttccgatatccaggagtaacgacagtggcactttgattACGACGAAGCGACGTCAATTTTCTTTCCACTTGGGAATAAGCGTCTGAACTTCGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan