Gene detail

Detailed information of aint_s0033.g85.t1 in Acropora intermedia

Genomic Location: sc0000033_pilon:1174849...1181710
NR annotation: XP_029188470.1, early growth response protein 1-like isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0033.g85.t1

GTTGATCACGAACAATAAGGTCAACAAAGATCACATTTTTTATTACAAAGCGAATGATTTGTTCTTTTCAAAACAACAGCCGGTGATTCTGGACCACTGAACTCAGAGCTAAAACACAATGTTACATATCGCTACACCCTCGAGCTAGGTGTCGCGAAAACAACAGTGCATAAGCGCATTCTTGCGTTCACTGTAGCATAAAGCGGTGTACTTCCCTACGGCCAAAACCGAGCACTTTCACAAACTGACGAAAAGACAGAAGAAGTATAATGCAACCGGGCGTAGGAACCTTAAATTTTGTTTTTTTTGGGGGGCAGAATGAATCTCCAATTTTACAATTCAACAAAGCTAATTAACAAGAAGTGAATTGTGTCGATGACGACATGCAAATGACGTACATACAGGCCTGCGTGATACTTCACCATCCACAAACTAACGAAAAAAAAAAAGTATTCGAAGTCCGTCGTTTGCACCTCTGAGTGTTCGTAAATTATTACGATGGGCATTAGACAGTCAGTCGAAAACTATAGGACAGTGATCGTTGTCCACAGCTTTCTTTAACAGCAGAATGTACGATTGGTAGCATAGAATGAACAGTAACCGCGAGGCGAGAGAAAAGGCCACAGCGTCCACTGAATTCCGAATTCCTAAGCCGACCCCAGAGAGGGGCAACGAGAACGTGACTGGGATAATTTTGATTATGCCAACTTGAAAAGAAAAAACACATTATTGCGACGACAAGAGCCGCTACAGGCAACGTTCTACCAATATAACAATTTTCGCAATCTGATCAAACAGATATTGTGTAAGCAAACAAGCTGCATCGTCATAGCAAACAAAACGGAAACGCACGATCGTTAACCAGAACGGCAAGTCTGCCTTGCTCAGCAAGAAGCTGAAGCTATTGTCCCAGCAAGGCTCCACGTTCCAGCACCGAATAAGAATGTAACCTACACAAATTTCAAGCGGAAGTTTGAATCGTCAAAGCTCTACGAAGCAAAGGAGTGAATCCCGACGGAAAACACCGAACCAACCGAAGCTTAAGCGAGTCGTTGTTATTGCTGGCCAATAACTCGACTATACCGATAACTGTTGATCAGTTTTACAACACACAAAACAAAAAATCCCGAAGAATTTCAATCGTTTGGAGAGCCGAAAGTTGAACAAATATACCATGATGATTACCATGACTGAAGCTTTGGATAGTCTTGCTCAAGTTGCCACCGATCAGCTTTTTGGTTTCGACACAGCCAGTCTTTTGACGCCTCAGTTAGCCCGCCAAGTCCCTCAACTGAATGCCGAAGACTTTTCATTCGTTCAGGCTGGCATGGATGAACCAACCAACATTTTTGGTGAGCCGGTTGATTTCCACGGCCCTTCTTCTGTTCCAGGAGATCTTGACTTGGATTACACTGTTCCGGATGTCAAGCAAGAGGGTGCCCACCATAACATTAAAGCATGTCAGCAACGACTGGCACATTTCAAGGTTCCAAGTCTACATGATGTTATATCTGGCCCTTCTGGCTCAACTCCTCCACCTAACGGACAGGGGTCTCCCTACAGTTCACCAGCACACAATCTTTGGATTCCCGACCGCACAATTCTCACACCTTTAGCTGGAACAACACCTTGGAGTTCATTCTTCCAAGATCCAAAACTTCCAATGCCACTTGAAACCAGTACAGGGCCAAGCAAGGTATTGACACCCACTCCACAAGATCTTCAACAAGAGCAGGTTCCTGTCTCCTCTAGCAACAACCTCTCTGGGATGGCTAAACTCCCATCACAGGCAAACATGTACCAGCGACCCATGCAGCAGCAAGTGAGCTCATCATCACCAATGTTTATGCAAGCTACAGCTACTCTGAACATGAAGTGGCCAATCATAAGTGGCCCTTCTTTTCCTACCCCCATGTCCCCTGACACAATGATGGACAAGTTGCTCTTGCAGACAGCATCTCAGCCAGATTTCCTTGCCACACCAAGTAAGCCTGTACAGAGAGGTCGCCCTGCAAAAGCAGGTAATGCTTTACTAAAAGCAAAGCGTACCAATCCCACTGATGGCCGCTCAAGGACACCACCAAGTGAGAGACCTTATGCTTGCCCAGTTGAAACCTGCCCAAGGAGGTTTTCAAGGTCTGACGAACTGACCAGGCACATGCGAACCCATACTGGACAGAAACCATTCCAGTGCCGAATTTGCATGAGGAACTTCTCGCGATCAGACCATTTGACCACCCACATCCGCACCCACACAGGAGAAAAGCCATTTGCCTGTGAAACCTGTGGCCGGCGATTTGCACGATCTGATGAACGCCGGCGCCATATGAAAATCCACCTGAGAGAACAAGCAAAGAAAGAGGAGGAGGCAAGAAAAGCTGTGGCCTCTCAATCCAATGGAACTGTTTCACCCATTCACTGCAGGTCTCCTCAGTCCACACCCTCACCTATTCAGGTCCCAGTGACCTCGGTGAATTCTTTCTAAGAAGCTTATTGCAAACAGCGCTGGCGCTGTAAGAACATTTTGATCTTGAAGAACACTACTTTGTTGACAATTTGTTAATATTTAACAAGAATTTTTAAAGAAGGCTGGTCCTCTGTAAATACTTTTGTTGACAAAATTTGTTTCAAGGTACTGCAAGTACCCCAAATTTGTCCACCAAGGACTTATGTTCCACATATAGAAGGCATGAATACAGCTGGTTTCTGTGTTTCTATGGCTTCTATTATTTTTCATAAAGAAAATAGATTTCAGTTCTAGCAAAATGACAGTCAGTGTTTTACAGTGCAGTGCACATTGGTGTGTCCAGGAAAAATCTTGTTATTTAAGTTCATAATATTCAGAATTAGGCTGGTCCTAATGTACATATTTTGTCAGAGACATTTTAAGGCACAGACAGTGTCCAAATGGTACTAGGGACCTATTTTTCATACATTGAAGAAAATAATACAGGAGGTTTCTGTATTCAACTTAAGTGTTAAGATATTTTACATTTAGATATATAGTGTTTTTGTCAGATTGTTCTCCTTGGTACATAAGGTGTGAAaattagtgttatgattataacaataagaataattattaatgtcattaGCAGGGCTGTTTTCATCATTAATTTACAGATTCATAGCTAATTAGTTTTTTTTTTAATTTGTAACTACAAAAGGGTTAAACCCAGTTGTACAAACATTTAAAGATTTATGCCCATTTGTCAAGGAGAATAATTTTTTTCAAATTTCAGAGAGTATTACAACCAAAGTTAAAGTCAAGCTGGTCATTGACTATATAATTGCAGTGCTGGTCACTAAAATGATAAAAATAAAGCTGAAAATTTTAA

Protein

Uniprot

Gene family

Uniprot term	Description
A4II20	Early growth response protein 1 OS=Xenopus tropicalis OX=8364 GN=egr1 PE=2 SV=2
P26632	Early growth response protein 1 OS=Danio rerio OX=7955 GN=egr1 PE=2 SV=2
Q6NTY6	Early growth response protein 1-B OS=Xenopus laevis OX=8355 GN=egr1-b PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09203	EGR1; early growth response protein 1	-	Transcription factors	ko03000	deepkoala