Gene detail

Detailed information of aint_s0038.g53.t1 in Acropora intermedia

Genomic Location: sc0000038_pilon:974273...976644
NR annotation: XP_029196520.2, peptidyl-prolyl cis-trans isomerase E-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0038.g53.t1

TGCTGAAGATGTAGACGAAAAAGTACTGCACGCAGCGTTTATTCCATTCGGAGACATTACAGATGTCCAGATACCAATGGATTATTCAAATCAGAAGCATCGAGGGTTTGGATTTGTAGAATTTGAGCTCGCAGAAGATGCTGCTGCAGCTATTGATAACATGAATGAATCAGAACTGTTTGGACGCACAATTCGGGTGAATATCGCCAAACCTATGAAAATCAAAGAAGGCTACAGCAGAGCAGTTTGGACTGAAGATAGCTGGCTAAATAAACACGTAGGAAAGACCTTGGAAGACGCCGAAATGAAAGATGGTGAAGAAAAATCTCAAGAGTCAGCTGATGTTGAAGAAATGGCGAAAAAGAAAGGGAATCCGCGGGTATTTTTTGATATAACTGTCGGTGGCCGCCAAGCAGGAAGAGTGACCATGGAACTCAGGCATGACGTTGTCCCTATGACTGCAGAAAACTTCCGCGCTCTATGTACTCACGAAAAAGGGTTTGGTTACAGAGGCAGTATTTTTCACCGAGTTATCCCTCAATTTATGCTGCAAGGAGGCGATTTTACAAAACATGATGGGACTGGTGGAAAGTCTATTTATGGTCAGAAATTTGCGGATGAGAACTTTGTATTAAAGCATACAGGCGCTGGGGTTCTGTCCATGGCTAATTCTGGAGTGAACACAAATGGTTCACAATTTTTTATCACCACTGAGAAAACTGACTGGTTAGATGGGAAGCATGTTGTGTTTGGGCATGTTATTGATGGGATGGATGTGGTGAGAAAAGTTGAGGCAACTGGATCAAAGAGTGGGAAAACAAATAAAAAGATTGTGATTGAAGATTGTGGTGAGCTGTGAAAAACAAATAAGTGCATTGAGAATTTTCTATTGGTGCCCTTGTGATTATGGTACTACACGTGTTTCACAGAGATGTGCAAAAAAAAAACTTTATGGTTCCAGTGTGACTAGCCTTGCTGTAAACAATAATCTTATTGCTCATATTAGTTGAGGTGCGCAGTATACTGCTTTCTTTTCTCGTGTGTAAATCCCAAGGATGTATTAGTATCAGGGCTACATTTGCAAGTCAACTCTAACTAGGTGATCAAAAATGAATAGATAATTCAATTTTGTTGAACTTGCATGTTACATTAAACTCTTAGTTGACTATTTGACTTCTGTAGGTACTCACAAAGGGGTGGAAGTGCTAGACTTTTTAAAAGCAATAAAAATCTAATATGgtaatcaaattcggaatgttcacttaagtcgctcATTTTGACCAAAAAGTCTGGATTTTTGTAGCAACAAAGTTGTTTTAGTTCGCATCTCGCACACGCTATTGATAAAATCCGGGCATGAGGGCTGTCACGATCCTAGCAGGGCCGGACGGCTTTTTCCAGCCCTGCTCGCGTCATCGCGCACGGCCCTCATACGGGGATTTTCTCAATAGTTTTGCAATGAAAGCGCACACGGGGCTGTACGGGTCATATGATAATATAGCTTATGTTGTAAAGAACACCAAAGGAGGACTTTAATGTTCTTCAAATTTTGATTAGCTTTAACCAGCAGTGCACAAGATGGTTATGCCCTGCCAATGATGATGGCTGACACTCTATGAGTTATCCTTATGTAGCTAAATAGGTAAAAGAATAACATGAAAGGTCACAAGTTTGATTCCTGTGTAGAGAACTTCAAAGTTTGCCAAGTAAATTTGTTCTGAAATGTTCTGGCATATAATAATAATTACTATTGTTTACCAGAAAACTTCATTCCTTTGCATATTGAATGTGAAAAGTTCTTTTGATTCAATGGTAGAGCAGATTAGCATACTGAAGAGAAAAATAGACTTCTGTGCAGTGGCATACGAAAATTCCTAACAACCTAAAGATGTATTCTTGTAGACTTGTATTCACTTTTCTTCTATAAAAataataaaacaatagagtttatgttcgcgcacataaatatgttttgggcccgactcagactcattttcgcccgagctgtcaggcgagggttaaagtgagctcttagaagggcccaaaatatatttatgcccaagaacataaactctattactattattatcactttggaaggcattgaggaaataaacactgaaaaaatga

Protein

Uniprot

Uniprot term	Description
Q9UNP9	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1
A4FV72	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1
Q5R723	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan