Detailed information of aint_s0041.g99.t1 in Acropora intermedia

Genomic Location: sc0000041_pilon:1120831...1130909
NR annotation: XP_029188254.2, E3 ubiquitin-protein ligase TRAF7-like isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P35061Histone H2A OS=Acropora formosa OX=126732 PE=3 SV=2
P84052Histone H2A OS=Drosophila erecta OX=7220 GN=His2A PE=3 SV=2
P84053Histone H2A OS=Drosophila hydei OX=7224 GN=His2A PE=3 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF00125HistoneCore histone H2A/H2B/H3/H4DomainInterproscan
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF16211Histone_H2A_CC-terminus of histone H2AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR003613DomainU-box domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR009072Homologous_superfamilyHistone-foldInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR002119FamilyHistone H2AInterproscan
IPR007125DomainHistone H2A/H2B/H3Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR032458Conserved_siteHistone H2A conserved siteInterproscan
IPR032454DomainHistone H2A, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23430HISTONE H2AInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0046982Molecular Functionprotein heterodimerization activityInterproscan
GO:0000786Cellular ComponentnucleosomeInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0030527Molecular Functionstructural constituent of chromatinInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0006342Biological Processheterochromatin formationInterproscan

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