Gene detail

Detailed information of aint_s0043.g10.t1 in Acropora intermedia

Genomic Location: sc0000043_pilon:133106...148773
NR annotation: XP_044183342.1, phosphatidylinositol 4-kinase beta-like isoform X1 [Acropora millepora]
Species Acropora intermedia · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aint_s0043.g10.t1

ATGACAGAAAGCCAAGGATGTTTAACTGCACAGCCTGCTCTGTCATCTCCGAGGTCCAATCCATTCAAATCGTGGCAGAATGTTGACCATGGCTTTGAGATGCAGTTAAACAGTGATGGAAATATTGTTGAGAATAATAACCCAAATGCAGATCCACAGCCTCTATTAAATGGAGATACATCTCACATGGAGTCTGATTCTGAAACAATGGACATTGAAATGCAACATAGGAGAAGACAACTTCGTAAAAATCTAAGGCTCGATCTTGGGGATGCTGTTGCAAGTGGAGATGACAGCTTGCCACCTCCAAAGAGTTCCTGGCTGCTACGGCTTTTCGAGTCAAAGCTCTTTGATATGTCAATAGCAATTGCATATCTGTTTAATTCAAAGGAACCTGGTGTACTCACCTATCTTGGAAACAAGCTCTTTAGTTTTGATGATGAAGATGTCAACTTCTACTTACCACAATTAATTAATATGTACATCCATGTGGATGAAGTGTCAGAAGCTGTACATAGATACTTGGTAGAAAGATGCCGCAAGACTTTTTCCTTTGCTTTGCAGGCATCATGGTTGTTAGAAGCCTACTGCGCTGATGGGTGGCTTCCTTCTAAAGAGTATGCCAGAGGGACAAGACTTCTTCATCTAATTGTGGAGGAATGCAGACCAAAATCTCCCTTAAGCCCCTCATCAGTGTCAGGGTCTCATGCTTTACCCCCACCTGTCACATCTGGAACAACAACAGGACTGTTAACAACGCCAACAAAAAAGACACACCAACGGTCAAAGTCAGATGCCACAGCTGCTATCACGACAGCTTCAAGCCGTCTAATGCAATCTAATGAGTGCGAATCCCCAGGAAATGGGGACCTGAGGTATGGCCATGCATTTGACAGTCGCTGTTCAAAACACTCCCCAGTGGTGTCTCCAAGTGCCTCAAGTCCTGCTCTCAGTGAATTGGTGAGAGCTCCAGACTGTGGATGTCAGACTCCAAGGCTTGTTGCTCAGAGGGAATTCATTAGTGCATTGATTGCTGTGGGAAAGAGACTCACTTCCCTTCCAACCAAGGATCTCAAAACTTCCAGACTTTATGCTGAATTGTCACTGTTGAACCTGAACTTGCCTGCCAAAGTGAGCTTACCTGTACATTCTGGAATTGGAGAGCATTTTGTTGTTAGGATACCACACACTGCTGCAGTTGTGCTAAACTCCAAAGACAAGGCGCCATACATGATTTATGTTGAAGTCTTGTGTACGTTAGGAAATGACGGCGAGACCTTTCCAGCCAAGCAGTTTCTGCCTACGTTACGACAAACAAGGTCTGAAGAGCACTTACCGACTTATTGTCGCTCTGAAGGAATTGAATTCTCAATCTCGACCTCTGTTGACTCTGAAGATGAATGCTGGTCAACTGACATTGATGACAAACCCAAACAAGATGTAGTTGATGGCCCATTTGTTGCAGCAGGAGACATAAGGAGAAGGCTCTCAGAGTCCCTCAGTGCACCACAAGCGTTGTTTAAAAGGGACCCTGAAGATCCTTCAGCTGCTGTTCTAAAGGAACCATGGGAAGAAAAAGAAGCCAGGATAAGGGAAGCCTCGCCATACGGTCACGTGCCAAACTGGAAACTCCTACCGATGATTGTGAAATGCGGAGATGATCTGCGACAAGAACTTCTCGCGTACCAACTACTGCTTCAGTTCCAGGCAATTTGGATGCAAGAAAGGGTTCCACTTCGTCTAAGACCGTATGCGGTTGTTGTGACTTCTAGTGACAGTGGTCTCCTTGAACCTGTGGTCAATGCTGTTTCGCTTCATCAAATAAAAAAGAACAGTAAGATGTCACTTAAAGATTACTTCATCAAGGAACACGGGGACGTGAACTCTGAAGAATTTCTGAATGCGCAGCGTAATTTTGTGCAGAGTTGTGCGGCCTATTGCTTGGTTTGCTACCTCATGCAAGTTAAAGACAGGCACAACGGAAACATCCTCTTAGACAGAGAAGGCCACATCATCCATATAGACTTTGGATTCATCTTGTCCTGCTCCCCTCGTAACCTTGGCTTTGAAAATTCGCCTTTCAAACTGACGGAGGAGTTTGCGGAGGTAATGGGTGGTGTCGACAGCGACATGTACAATTACTTCAAGATTCTTATGCTTCAAGGTTTCCTTGCCGCACGCAAGAATATGGACAAATGTTTGCAGCTGGTTGAAATAATGCAAACAGGTTCACAACTACCTTGTTTCAACCGCGGTGCCTCCACAGTGCGCGCCATGAGAGAAAGATTTCACATGAATTTAACCGAACAGCAGCTGGGTACCCTTATCGATGACCTGGTGGAAACAAGCATGCACTCTTTGACGACCAAACTTTACGATGGCTTCCAATATCTCACCAATGGCATCTTATAG

Transcript

aint_s0043.g10.t1

TTTTGCTAGATACAGATAGTTCTACTGTTGAATTAAAAGACTTCCTATCTCTGGTTTTCCGGAGATTAAGAGAGGATACTTACCGGAAGTGCACTTTCTAAAAATGTGAAAAATCCTGGGTACGAGAGCGACTGTTTTGGTCAGTAGCCCGTATAGCATTTTGGGTAAATGCAGCAGATGTTTCGTCTTCCTTCAACAGTAGTAATTTACCAGCGCTCTAGTAAAAGGAATTATATTGGACGGTCTTTCCGTTCTAACTTGGATATCAACACATCACGACACCTTAGCGCCTTCCTCAAGGATTAATTTGTGCTCAGGTTGGACTTTTGATGCAAACAATGGACGTATGAGGACGTGGTACGGAGGTGGGCCGATATGTGTCGTTTCAATCGAGGATAATTCGCTTCATTGAACCGTTGGTGAATTTTTCTGGATTATCAGTTTCATGAGTGGGGAAAGTTGTTACGTTTACGTATGTAACGCCTACATATTGTGAAAGTTCTAGAAAAAAATTACCCATCGTGTTTCGGTGAACTTCGAACCCCGCCTTGAACGCTCGAGATACCACTAGCACTTCCGATTTCCTTTGTGGTCTCATCACGTAAAAAGAATAATACAACACGTTTTCACACCTTGAGCGACTCCAGTTTATTGACCGGCACTTGCCGATTCATGGCCCGTGCAGAAGTGGACAGTGTTTTGGTTGAGTGGACTCTAGTCTCGGTTTGCATTGGGTAAAGAATATCGTCGACAACAAGACTAAATTGAACTGTTAGTCAGACAGATTTCATACAACACTCCAGGGATTCAAACATCGCGTTATTTTTGGAACAGTGTGTCTGGAGAAAACAGAGACCTTAAGAGCATTTGCAGGTTCTGCATCGATACATATTATGTACTTCGTCTAAGTGAAAGCAGCTCAGCCTACGAATTTATTTGAATGCTGAGGTATCATTATACAATGCTAGTATAAGCTCACAACAGTAACCTTAAACTTGGTTGTTGTTATGACATTTCATGTATATGCACTGAAGATATCATTGCGTAATGACAGAAAGCCAAGGATGTTTAACTGCACAGCCTGCTCTGTCATCTCCGAGGTCCAATCCATTCAAATCGTGGCAGAATGTTGACCATGGCTTTGAGATGCAGTTAAACAGTGATGGAAATATTGTTGAGAATAATAACCCAAATGCAGATCCACAGCCTCTATTAAATGGAGATACATCTCACATGGAGTCTGATTCTGAAACAATGGACATTGAAATGCAACATAGGAGAAGACAACTTCGTAAAAATCTAAGGCTCGATCTTGGGGATGCTGTTGCAAGTGGAGATGACAGCTTGCCACCTCCAAAGAGTTCCTGGCTGCTACGGCTTTTCGAGTCAAAGCTCTTTGATATGTCAATAGCAATTGCATATCTGTTTAATTCAAAGGAACCTGGTGTACTCACCTATCTTGGAAACAAGCTCTTTAGTTTTGATGATGAAGATGTCAACTTCTACTTACCACAATTAATTAATATGTACATCCATGTGGATGAAGTGTCAGAAGCTGTACATAGATACTTGGTAGAAAGATGCCGCAAGACTTTTTCCTTTGCTTTGCAGGCATCATGGTTGTTAGAAGCCTACTGCGCTGATGGGTGGCTTCCTTCTAAAGAGTATGCCAGAGGGACAAGACTTCTTCATCTAATTGTGGAGGAATGCAGACCAAAATCTCCCTTAAGCCCCTCATCAGTGTCAGGGTCTCATGCTTTACCCCCACCTGTCACATCTGGAACAACAACAGGACTGTTAACAACGCCAACAAAAAAGACACACCAACGGTCAAAGTCAGATGCCACAGCTGCTATCACGACAGCTTCAAGCCGTCTAATGCAATCTAATGAGTGCGAATCCCCAGGAAATGGGGACCTGAGGTATGGCCATGCATTTGACAGTCGCTGTTCAAAACACTCCCCAGTGGTGTCTCCAAGTGCCTCAAGTCCTGCTCTCAGTGAATTGGTGAGAGCTCCAGACTGTGGATGTCAGACTCCAAGGCTTGTTGCTCAGAGGGAATTCATTAGTGCATTGATTGCTGTGGGAAAGAGACTCACTTCCCTTCCAACCAAGGATCTCAAAACTTCCAGACTTTATGCTGAATTGTCACTGTTGAACCTGAACTTGCCTGCCAAAGTGAGCTTACCTGTACATTCTGGAATTGGAGAGCATTTTGTTGTTAGGATACCACACACTGCTGCAGTTGTGCTAAACTCCAAAGACAAGGCGCCATACATGATTTATGTTGAAGTCTTGTGTACGTTAGGAAATGACGGCGAGACCTTTCCAGCCAAGCAGTTTCTGCCTACGTTACGACAAACAAGGTCTGAAGAGCACTTACCGACTTATTGTCGCTCTGAAGGAATTGAATTCTCAATCTCGACCTCTGTTGACTCTGAAGATGAATGCTGGTCAACTGACATTGATGACAAACCCAAACAAGATGTAGTTGATGGCCCATTTGTTGCAGCAGGAGACATAAGGAGAAGGCTCTCAGAGTCCCTCAGTGCACCACAAGCGTTGTTTAAAAGGGACCCTGAAGATCCTTCAGCTGCTGTTCTAAAGGAACCATGGGAAGAAAAAGAAGCCAGGATAAGGGAAGCCTCGCCATACGGTCACGTGCCAAACTGGAAACTCCTACCGATGATTGTGAAATGCGGAGATGATCTGCGACAAGAACTTCTCGCGTACCAACTACTGCTTCAGTTCCAGGCAATTTGGATGCAAGAAAGGGTTCCACTTCGTCTAAGACCGTATGCGGTTGTTGTGACTTCTAGTGACAGTGGTCTCCTTGAACCTGTGGTCAATGCTGTTTCGCTTCATCAAATAAAAAAGAACAGTAAGATGTCACTTAAAGATTACTTCATCAAGGAACACGGGGACGTGAACTCTGAAGAATTTCTGAATGCGCAGCGTAATTTTGTGCAGAGTTGTGCGGCCTATTGCTTGGTTTGCTACCTCATGCAAGTTAAAGACAGGCACAACGGAAACATCCTCTTAGACAGAGAAGGCCACATCATCCATATAGACTTTGGATTCATCTTGTCCTGCTCCCCTCGTAACCTTGGCTTTGAAAATTCGCCTTTCAAACTGACGGAGGAGTTTGCGGAGGTAATGGGTGGTGTCGACAGCGACATGTACAATTACTTCAAGATTCTTATGCTTCAAGGTTTCCTTGCCGCACGCAAGAATATGGACAAATGTTTGCAGCTGGTTGAAATAATGCAAACAGGTTCACAACTACCTTGTTTCAACCGCGGTGCCTCCACAGTGCGCGCCATGAGAGAAAGATTTCACATGAATTTAACCGAACAGCAGCTGGGTACCCTTATCGATGACCTGGTGGAAACAAGCATGCACTCTTTGACGACCAAACTTTACGATGGCTTCCAATATCTCACCAATGGCATCTTATAGTAGCACATAAGCTCAATAGCTGGATCAATCGAGTCGAATTGAATGTTCGGAGAAAAGAATTTCACGACCTGAAATGAATGGGGCTAATTCAGAGGTTCTCACAGGAAAGGAGAAAGAGCTTTATGGCAGAGGCCATCAGGATTTCGATTGTATCTTATTACAGATGCCTACGGGAAATCCAATGACTTTCAATATCTCGTGAATCCGTTCATGTAGATAAATACCATTTCTGTCGAGCCTTTAATTGCCCCACAACGGAATATTTTTTAAAAGAACGTGGGCTGAGCAAATGATAAGGGGCTGTGTCGTTTTCCTTTTTTACGCTTGTTGAGGTTATTAAGGCGAGTGAGAATTCCACAATTGAATGTCGCATTAGAGGACGACGGAACTTTCTTGCAAAGACTAACTTGGGTATTGATCAGTCGTCGAAATTCAGAAGCCTCGGGATTAAAGCAAGCAAGTATTTTTCTCCACAAGTGAACTCAGTTGGGATTAAGCAAACTTGTTTTATTTGTCACATGATCCAATGTGATGATCAGTTTCATATGCAACATATGCTTGTTCAGTTCAGACCTTTACACGGATGACTTTGAAACAATGGAGTTATGGGCAACGCAAGTGTTAGTGATGAATACGCCACAAGTAATCAGCAAAAGCTCGTAAGATTCCTTCCGCATCATTAATTATACTGTGATATTTCGTGAGCGATCTTGCAAACATCAAACGTTGTAGCATAACTGATTTGTACATTGTGGAGCACTCTTTATTGTTATATTTAACTATTATTATTTTGCGAGACCTAGCCAAGTGACTAGCCAAGATATAAGTTTTGCTAGTTAGCTCACGAACGTTGTCGGAAAGAGAAAGGCACGCTCAATGTAAAACGATTATTTTATTTTCGCACTTTTTCACGACATCCTTCTGTTGGCAACAGTCGAAAAATACAGAGATCGACACATGTTTTCCTAATAACTTTGTGGCATTTAAAGTACCAACGAAGAAATGAGGGAAGCGAGAATTTATAGAAATATAGCTTTGAAAAACCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UBF8	Phosphatidylinositol 4-kinase beta OS=Homo sapiens OX=9606 GN=PI4KB PE=1 SV=1
A9X1A0	Phosphatidylinositol 4-kinase beta OS=Papio anubis OX=9555 GN=PI4KB PE=3 SV=2
B0KWC1	Phosphatidylinositol 4-kinase beta OS=Callithrix jacchus OX=9483 GN=PI4KB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003630 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21245 all species →	PI4KB-PIK1_PIK	PI4KB/PIK1, accessory (PIK) domain	Repeat	Interproscan
PF00454 all species →	PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049160 all species →	Domain	PI4KB/PIK1, accessory domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR018936 all species →	Conserved_site	Phosphatidylinositol 3/4-kinase, conserved site	Interproscan
IPR000403 all species →	Domain	Phosphatidylinositol 3-/4-kinase, catalytic domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR036940 all species →	Homologous_superfamily	Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily	Interproscan
IPR001263 all species →	Domain	Phosphoinositide 3-kinase, accessory (PIK) domain	Interproscan
IPR015433 all species →	Family	Phosphatidylinositol kinase	Interproscan
IPR042236 all species →	Homologous_superfamily	Phosphoinositide 3-kinase, accessory (PIK) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10048 all species →	PHOSPHATIDYLINOSITOL KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004430 all species →	Molecular Function	1-phosphatidylinositol 4-kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0048015 all species →	Biological Process	phosphatidylinositol-mediated signaling	Interproscan
GO:0052742 all species →	Molecular Function	phosphatidylinositol kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19801	PI4KB; phosphatidylinositol 4-kinase B	EC:2.7.1.67	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora intermedia tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora intermedia, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →