Gene detail

Detailed information of aint_s0043.g4.t2 in Acropora intermedia

Genomic Location: sc0000043_pilon:24346...68331
NR annotation: XP_015763742.1, PREDICTED: tumor necrosis factor receptor superfamily member 16-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0043.g4.t2

TTTTGGTAATAAGGCTTGTTGTTGTTGTTCTTTTTATGGTACACTTGATTTTAAAAAGTGCAGATGATGAGTTTTCCAATGGGAAAACAAGCTATTTGTTATTTTATTTACTGGTTTGTAGTAATGCAGGGTTTGATCAGCTTTGTAATCATACATTTGCAATTTGACCAGTCAACTTCTTTTGAAGTTATATTATGCCTTCTACGGTCAGGTTGAGGTGAATCTCAGATAATGATGTACACCTGGATTCAAGTTAAGTATTCAATATTATAATTATTATTTTGTGATAGAAATAAAATGGCTCATGTATTTATAATTTGTCACAATAAGAATGGAAAATTTGTAGTAatgaaaggcttacacctgaaacatcatcttttaatcttacagttgcaatttgacttgtccactcatttgataCTCATTTCTTGTAAAATTCCTACATTCCTTGACAAGTTGAGAAAGAAACGTTTAAAGTCACCTGGCTTTCAATTTGGACTTTGCCAATCGTTAAACGGGATTGTTTTTACTCGTTCTCTTTCCTTTTTTTTTCTACGGTGATGGAACACTCGACGACCATTCTCAAGGCATTTTTGCTAGCCAATGTTCCAAACCTCTCTTCTTCACGTCCAACAAAGTGTGGACCATCACAATACACAGTATTCAACCCTCAAAACCATGAGGAAATTGTCAAGTGCCAAGACTGTCCAAAATGCCCAAGAGGTGAGGGTGTTCCTGTGCAATGTGGCAGCAGAGTTCCAGATGGAACATCCACGCAATGCAAGCCTTGTGAACTTGGCAAGAGTTTTTCAAACACAACTGACTCATCAACTTGTCTTTCCTGCCATGAGTGTGGAAAGAAGACTGTACTGCAGCAGTGTAATCTAACTGAAAATCGTAAATGCGGAGAATGCCCTGCAAATTACTTCTTGGAGCTGCATCTTAATGACTGCGTGGAATGTTTCACATGCTGCAGTGATGTCCCAGACAATGAGCGAATGGAACAATGCGGCAAAGATCTTGGGTTGCCGGCATCCCAATGGTGTGAACCTAATGAGAAAAACAAATTATGTGCCAAACTGAATGCAGCAAAAAATGATGAGGCAAACAAGACTACCACTTCAACATCAGCAATTGTTAGTCCAACAAGTACCAGTACAGTTTCTTTAGTTGAATCTAGTAGAAGCAGCATTTCCATGAACAAGTCAACTATTGCTACAGATTTGGCTGGTAAAACTGGCCAAACTGGAAACTCAATATTAATTTCCTCATCATGTATACTAGCTATTTTGTTTTTGGCTATTATTCTCATCTATAAGAAATGGTCTGCCAGGAAAGCAAGTTCTACAAACAGGAATGAGGAGTATGTTGAAGTAGAGACAGAAAACCATGAAGTGCAACAGAGCAACAATATGAACATGAGCATCAATGTTGATGACATTCCTGAAGGCAAGTCTCAAAGAAATCCCCAGGGACAAGAGATGGTCAACTTTGACATGTTGAACATTGAGAATATTCCTGAAGAGTTGCTGATTACTGACATAAGGAACTTGTTCTGGGTGAAAAATGGGGACAACGAGGATGTGATGATCTTCCAGGTCCAAAACAAGCTTGATATCCCAGAGACTGCTCAAAAGAAGACGTGGCGCAGCGTGTTTCTGGCCTTAAAGGTGCATCCAGATCATTTTAACAAGATATTAAGTAGCGGAGACACAACTTTTGCAGCTATCGATTACTTCGAAACACTGGGTCTCCAACAACCAAAATTGAGAACATTTGTGAGCGCACTTCTTGTGTGTGGAAGGAACGATCTAGCTAGTATTATATGCAACTGGCCATACAAGAGCAATGAAGACACAAACTGTGAAACACAAGTTTAATAATTATTATTGTTTTGCGCCAGTCTGACATAGTTCACTCTTATTTAGTGAAGACCGGTCTGAACAAACAATATATATATGAACAAGCTATATTAAGTCAGGACTTTTTTCATAACTGTTCAATTACCTTTATCACTGCTAGACCTATTGTATTAATTTAATTTCATACAAGATGTGCATAGGAAAAGCAGTGAAGCAGGTCAATTCATTGGAGAGTACGTTATATTAAAGTTCACTATGGTGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04722	TNFRSF10A_B, TRAILR1_2, DR4_5, CD261_2; tumor necrosis factor receptor superfamily member 10A/B	-	CD molecules	ko04090	deepkoala