Genomic Location: sc0000047_pilon:147346...150986
NR annotation: XP_029186541.2, transcription and mRNA export factor ENY2-like [Acropora millepora]
Species Acropora intermedia · all data for this species · gene families
| CDS |
| aint_s0047.g21.t1 |
| Transcript |
| aint_s0047.g21.t1 |
| Protein |
| aint_s0047.g21.t1 |
| UniProt accession | Description |
|---|---|
| B5FZ63 | Transcription and mRNA export factor ENY2 OS=Taeniopygia guttata OX=59729 GN=ENY2 PE=3 SV=1 |
| Q3ZBJ0 | Transcription and mRNA export factor ENY2 OS=Bos taurus OX=9913 GN=ENY2 PE=3 SV=1 |
| Q9NPA8 | Transcription and mRNA export factor ENY2 OS=Homo sapiens OX=9606 GN=ENY2 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009650 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10163 all species → | EnY2 | Transcription factor e(y)2 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR038212 all species → | Homologous_superfamily | Transcription factor EnY2 superfamily | Interproscan |
| IPR018783 all species → | Family | Transcription factor, enhancer of yellow 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12514 all species → | ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000124 all species → | Cellular Component | SAGA complex | Interproscan |
| GO:0003713 all species → | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005643 all species → | Cellular Component | nuclear pore | Interproscan |
| GO:0006406 all species → | Biological Process | mRNA export from nucleus | Interproscan |
| GO:0045893 all species → | Biological Process | positive regulation of DNA-templated transcription | Interproscan |
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0006357 all species → | Biological Process | regulation of transcription by RNA polymerase II | Interproscan |
| GO:0016578 all species → | Biological Process | obsolete histone deubiquitination | Interproscan |
| GO:0016973 all species → | Biological Process | poly(A)+ mRNA export from nucleus | Interproscan |
| GO:0071819 all species → | Cellular Component | DUBm complex | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11368 | ENY2, DC6, SUS1; enhancer of yellow 2 transcription factor | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora intermedia tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora intermedia, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
