Gene detail

Detailed information of aint_s0080.g1.t2 in Acropora intermedia

Genomic Location: sc0000080_pilon:106943...118155
NR annotation: XP_044176408.1, 85/88 kDa calcium-independent phospholipase A2-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0080.g1.t2

CTTCGAAGAGGAAATTATTTCTTGTGGGTTTGTAGCCCATTCCGCTGCAGTTTTTCCTCCAAAAGGATGGGAAGCACTTTTTCAAGTTTCCGCGTGGAAGAAACGGTTTCGACACATTATAATCATGTCACCGTTTTGGAAAAGAAAGTTGATGGTTCGGCGAGTCTGCGATTGTATCATGTCACATCTAATCGATTCGAAGCTGTTTTGTTTAACCCCAAACATTCACCAAACTGTTTCTGTCTTTTCCGAATCACGGAAGAAGTGGAAGCAAGGAAAAAGTTCAAAGTCCTTCATAAGAAGCTTTCACCATTCTATCAAAGTTCTTCTAAATGTTACAATAGCGCTGTGCTTCAAGAACTAATTTCTTGCTTAGAACGGCACCCTGATTGGTCGTTAGCCCATGTTGCTTCACATGTGGGTTTGCCTGAGTGTTTGAAGCATAAGGCAATTGGGGATAGCATCGACAGCTCATGCAGTGATAAAAAGAGGACTCCTTTACATCTAGCATCCAGGAGTGGTAAACTGGAGTTTGTTCAAAGTCTAATGGATTTTGATCCAAAACTTCTGGTCAAAGACAAACTTGGCAACACTCCTCTTCATTACGCTGCTGAAAAATATCCAGAGGTTGTGAACTCCTTGCTCAAAAAAGGTCATGAGTTAGGAAACCAATTGTCTGAGGTAGTCAATGCAACGAACTCCAAACATGAATCAGCTCTTGATGTGGCATGTCACTACTCTCAGAATGACAGCGTTCAGATGTTACTCGAGGCAGGAGCTGATCCAAGAAAATCTCATGAAGGAGTTCATGCGATTCATACAGCTATGAAAGTGAAGAGTGACGCGTGTGCTGCGACACTCTTAGAGTTCCATCCTGAGCAGATTCATGCCCGAGATACTAAATATGGAGGGACACCACTTCACTGGGCGAAAACCAAAGAAGGAGTTGAGCTGCTTATCAATCGTGGAGCTGATATAGAAGCACAGAATAATGACGGCGAAACTCCCTTGCATATTATGGCCCGTCGCCGAAGACTCGGCTGTGTCGTTATGCTGTTAAGTGTGGGAGCCAACGTAAACGCGCAAAGCTCCGATGGATCTACGCCGCTTCACTATGCTGGAGTTGTTGACGAGATAGACATTGTTCGTGCGCTTATTGTATTTGGCGCCAATGTTAACTTGACGAACAAACTACACGAAACAGTCCGGCACGTGGCCACTGTTGCGATGCAGCGTCGGTGGCGTGATGTTGTGCGAGCTCTTGGATTCGTCGGAGCAGCGCCTTGTGATAAAAGCCAGAATGGATGCACATTGGAATGCAGTAAACCCTTCCAAGAAGAACTGGTGATTGGTGGAACTGGTGTCAGAGCCGACCCCAAGTTACCAGGTTACCAAGACGTCATCAGTATTACTGCTGGCTTGGTGTCCGCTGGACTGTTTCAGTCGAGCCCTGGATTGGACACCGTTGATTCGGGACAAGCTGCTCAGGGTTCTCACAATGAATCTCTGTTCAAATCGCTGCACGGGAAAGAAACTGTTTTGACGTTGGATGGAGGTGGCATCAGAGGACTGATTCTCATTCAACTGCTGTTGGCCTTGGAGGAGTTTACAAAACAGCCAATTGTGAAATTGTTTGATTGGATAGGAGGCACAAGTACAGGCGGTATACTGGCACTTGCGGTTGCTCATGGAAAATCTGCGCGGTGCTGTCAGGGGCTGTACTTCAGGATGAAAGATTTGGTATTCCGGGGACAGCGACCTTACGATTCCGAACCACTGGAGAAATTTTTGCGGCAGGAATTTGGAGAAGATGTAAAGATGACGTCCGTATTGTACCCAAGAGTTCTTGTCACTGGCGTTCTGGCTGATCGCCGTCTTGCAAGTTTGCATttctgcacaaatAGTTCTTGTCACTGGCGTTCTGGCTGATCGCCGTCCTGCAAGTTTGCATTTCTTTCGGAACTTTGACGTTCCCGATGATCACTGTGGTGACAGTCGTGGTAAATTAAATTTCAAACCTCCTC

Protein

Uniprot

Uniprot term	Description
O60733	85/88 kDa calcium-independent phospholipase A2 OS=Homo sapiens OX=9606 GN=PLA2G6 PE=1 SV=2
P97819	85/88 kDa calcium-independent phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g6 PE=1 SV=3
A0A3L7I2I8	85/88 kDa calcium-independent phospholipase A2 OS=Cricetulus griseus OX=10029 GN=PLA2G6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF01734	Patatin	Patatin-like phospholipase	Family	Interproscan
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002641	Domain	Patatin-like phospholipase domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR016035	Homologous_superfamily	Acyl transferase/acyl hydrolase/lysophospholipase	Interproscan
IPR047148	Family	85/88 kDa calcium-independent phospholipase A2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24139	CALCIUM-INDEPENDENT PHOSPHOLIPASE A2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016290	Molecular Function	obsolete palmitoyl-CoA hydrolase activity	Interproscan
GO:0047499	Molecular Function	calcium-independent phospholipase A2 activity	Interproscan
GO:2000304	Biological Process	positive regulation of ceramide biosynthetic process	Interproscan