Gene detail

Detailed information of aint_s0096.g2.t2 in Acropora intermedia

Genomic Location: sc0000096_pilon:42746...133135
NR annotation: XP_015777623.1, PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Acropora digitifera]
Species Acropora intermedia · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aint_s0096.g2.t2

CTTACCTTATGAAATGGCAGCTTTCTTTGCATGCTCATCAGTACAGAAAATCTGCTTGCGTTTTTCATCATCCTGGTGTAGTCGTTTGCGAACTTATCCATTTCAAGACAAAACTCGGAAAAGAACTTACAGGTCATTTCAGTCCAACACTGGCACGGGAATTGCCTCTAGATCAGAGTTAAAAACAAAAGCCAGAAGAGTTGTTGTCAAACTTGGGTCAGCTGTTATCACTAGAGATGATGAGTGTGGGGTGGCTCTGGGGCGGCTTGCCTCTATCGTGGAACAAGTTTCTGAGTTACAAAATGCTGGTCGACAAATGCTTCTGGTGACAAGTGGTGCAGTTGCGTTTGGAAAGCAAAAGCTAAGGCATGAAATTCTCCTTTCTCAGAGTGTACGTCAAACATTGAAACCACATGATGTCTTGAAGGTTCTCATAACAAAGCAAGATATTCGAGACAAATTTTCACTGGACAACTTGCGATCCACAGTAGAAGAGTTAATCTCCATGAATTGCATTCCAATTATCAATGAAAATGATGTAGTTGCATCACCTCCTCAAGTTGATTTCGATTTGGCAGGGATGAGGAGAGGACTGGTGATCAGTATCAAGGACAATGACACCCTATCTGCCTTGCTGTCTGTAGAATTGAAGGCAGATTTGCTCATGATATTGTCAGATGTGCGAGGTATTTACAGTGGCCCACCTGATCAGCCAGACTCTCGTCTTCTGGACACATTTAGACCATATGACATGAGCAGTATTGAATTTGGAAACAAGTCAAGAGTAGGACGTGGAGGCATGGAGTCAAAAGTCAAGGCTGCTTCATGGGCCCTTGAAAGAGGCACCAGTGTGGTAATAGCAAATGGAACCAGTAGTGATTATGTGATTCGTCAAGTATTAGATGGACGCAAAGTAGGCACATTTTTTACTATGGTTGATGAAGCAGGACCATCTGTGGACTACCAGGCAGCTGAAGCTCGAACAGGTGGACGAGCATTACAGGCATTGTCTTCCATTGAGAGGGGCAGAATTATTTACAAACTAGCCGACCTCTTGATTGAACGTAAGGATGAAATTCTTGATGCAAATTCCAAGGATCTTGAACAAGCGCGCTATGATGGCTGTCTACCAGCTCCTTTGATAGCCAGACTATTGATGACCCCTGCTAAACTAGAAAACCTTGCCTGTGGATTACGTCAAATTGCAGATTCTTCGCATGATATAGTGGGTCGTGTGATAAAGCGCACAAAGGTAGCTGATGGTTTACTTCTTAAGCAGGAGACAGTCCCCATTGGAGTATTGCTGGTTATTTTTGAATCACGACCAGATGCTTTGGTCCAGGTTGCAGCACTTGCCATCAGTACAGCCAATGGTCTCCTCCTGAAAGGTGGTAAGGAGGCATACCATAGTAACAAGTGCCTCCACAATCTTGTGCAAGAGGCATTGTCATTGTACGTCTCACCGGATGCTATAAATTTGGTTAGCACACGAGAAGATGTAAATGACCTTCTTCACCTCGATAATTACATAGATTTGGTAATCCCTCGTGGATCAAGTGAAATGATTCAACGCATACAGTCAATGAGTAAAGGAATTCCTGTACTTGGTCATGCCGAAGGCATATGCAGTGTTTATGTTGATAAGGATGCTGACCTTGAAATGGCTACAAAAATTGTGGTAGATTCCAAATGTGATTATCCAGCTGCATGCAATGCAATGGAAACTCTTTTGGTGCACAGAGATCTCATCAAGACATCTTTTCTAGACCGTCTACTTAAAGCACTAAGGGAAAAGGGAGTGATTGTTCATGCTGGACCAAACCTAGTAAGGATGTTACCTCTAGCACCTGCACCAGCAAAGAGTATGAAGAGAGAATACAGTGGGTTGGAATGTGCCATAGAAGTGGTCAGAAATGTCGAGGAAGCTATTGATCATATCCATCAGTATGGTAGCTCACACACTGATGTCATTATCACTGACAATTGCGATACTGCGAAGTCATTTTTAACATCAGTGGACAGTGCATGTGTATTCCATAATGCAAGTTCAAGATTCTCTGATGGATATCGTTTTGGGCTTGGTGCTGAAGTTGGGATAAGTACTGGTCGTATCCATGCTCGAGGCCCTGTAGGAGTAGAAGGCTTGTTAACTACGAAATGGGTGCTCACTGGCGAAGGGCACACAGTTGCAGACTTTGCCAATGGGGGTCCATTTAAGTATCTTCATGAAGTCTTGCAGCTTCATGAAGGCGCCGAAAGCTTGTTGGAGGAGGAAACATTTGATAACACTGGAGATGACAAAGCTATTCAAAAATAAAATCCTTGGTCCAGTTTTCTCCTTTTTCGTAAAACAACCTATTTCCACCTAGCAATAGAAATAATGAGAATTGGCAATCCACTTCCAATAGCGAGAACCGAAACTAATCAGCTATTTTGTTTCTTGTAGGCAAAGGTGTAAATTGAAAATGGCTGATCTTATAAAAGAAAACAGGTATTCTAAGTCTGAATATATGTATCTACTCTAAAACCATCTTGCATACAAAAAAGAAACAGCTTGAAAAGTCACCTGTTCTTCAAAGAATTTGATATTCCAAAGTGACAACTGGAATTTTTGATCATGTTGTAAAGGCGATAAATTAAAGTAAAATAAAATATGGCCGATTTTGGGGTGAATTTAAGAGGAAGAAGAACTTAAGAAATGCGAGTCTGATTATGCTTTAAGAAACAGGTATCTATTCTAAAATTAAAGCGTCGTACATTTGTTGTATGTGGGGAAAAAAAACAAAAAATACTCGGGGAAAGTTAGTGGCAAAACCTTAAGTTTCTAACATGAAACACTGGGTCATTTTCTATCCGTACGTATTGATCTTGAACATTTTTACATTATTTGCTGTGTCACGATTGGTAAACCTATTAAATCGTAGAATTAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P54886	Delta-1-pyrroline-5-carboxylate synthase OS=Homo sapiens OX=9606 GN=ALDH18A1 PE=1 SV=2
Q5R4M8	Delta-1-pyrroline-5-carboxylate synthase OS=Pongo abelii OX=9601 GN=ALDH18A1 PE=2 SV=1
Q9Z110	Delta-1-pyrroline-5-carboxylate synthase OS=Mus musculus OX=10090 GN=Aldh18a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan
PF00696 all species →	AA_kinase	Amino acid kinase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR019797 all species →	Conserved_site	Glutamate 5-kinase, conserved site	Interproscan
IPR000965 all species →	Domain	GPR domain	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR001057 all species →	Family	Glutamate/acetylglutamate kinase	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR020593 all species →	Conserved_site	Gamma-glutamyl phosphate reductase GPR, conserved site	Interproscan
IPR001048 all species →	Domain	Aspartate/glutamate/uridylate kinase	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR036393 all species →	Homologous_superfamily	Acetylglutamate kinase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11063 all species →	GLUTAMATE SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004349 all species →	Molecular Function	glutamate 5-kinase activity	Interproscan
GO:0006561 all species →	Biological Process	proline biosynthetic process	Interproscan
GO:0004350 all species →	Molecular Function	glutamate-5-semialdehyde dehydrogenase activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12657	ALDH18A1, P5CS; delta-1-pyrroline-5-carboxylate synthetase	EC:2.7.2.11 EC:1.2.1.41	Arginine and proline metabolism	ko00330	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.