Gene detail

Detailed information of aint_s0105.g11.t1 in Acropora intermedia

Genomic Location: sc0000105_pilon:271636...283067
NR annotation: XP_015754284.1, PREDICTED: uncharacterized protein LOC107333936 isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0105.g11.t1

atgatgtcacaagatgaagtacctgaacaagtagatgcagtgcagatttcccaggagcaaatattaaacattactctactagcaagtgaatggaagtcatcagctggtggtttatcaacattaaatagggaacttgcaattcatctgtcacagataccaaatgtaagagtttcactgtttgttccagaggatgcttgtaaagatgaagacaaaagggaggctagatcttttggtatcagtattcttgatgcagagaagtgtgtgggttttgagcctcttctttggttgagcaacccacctcaagatcacaaaatagatgttattgttggacatggtgtaaaacttggtcgtcaagtacaatttatcaaaagacattcaaaccttgagaactgtaagtgggtacatgtggttcatactgctccagaagaactgggcaaatataagggctactgtagcccaattttgagaggtgaaaagaagcactggtttgaggttgatctttgtaagtgtgctgaccttgttgtgccagtgggaccaagacttggtggcgcttatcgtttgtatttgaaaaaatgtaaagaagatgaggacttttttgagcttactcctggtctttttgagcgtgagttaggagatttacctgcaaagcaaaaccccaaagatgagaaggatgatttcattgtgttgttgtgtggacgtggtgatgaagaggattttgaattgaaagggtacgacattgctgtcaaggcatttgctgatcagcgactgaagggaaaaaattactctttgctgtttgttggtgcacctgaagggaggcaggatgaggtcagggaaaggcttctcaaaattacaaatgaaggaattacaaatgaaggaattacaaatgaacaactgacagtgagagagtttgtaaagagcagagaaagaatgaaggagctcttttgtgaagtggatatggtcatcatgccttcaaaatctgaaggatttggccttgttgcccttgaagccctgtcagctggtttacccattcttgtagggaaaaactcaggatttgcaagagcaatagaggtcattccacttggatcatacagtatagttgattcagacgatcctgctaaatgggctgaatgtgttgagggtgttcgtgttagacacaaagtggtccttcaagaaaataaaatactgaaagaacattatggcaaggattactgttggaagaaacaatgtgaagaacttgttgacagattatggaagatggtttATGgctcctgtactgctcaggctgttgcagcaggtgactgggttgaaaatcagcagagtgcaatcctacaatcattttgttcgcctgatcaaagaacatttcaacagcatatggaagaaggtgcaattacctcaggaagccaaaatgcaaagaagtcgggcaaaaggaaaatttcagaatccaATACTGAGCATGGAACACGGTTGGATGAGAAACTTGGCAAAATACAAAGATCTAAGCAACAGTTGCCTTCAGTTTCATCAGAGACATTTCATGAACCTCATTCAGTGCACAAAAATAAAATTACTGAAATGGAGAGAGCCTTGGCAACATATGAAAACAAAGAGCACTTAAGAGAATTTGGAGAGAACCTTATCACACTTCTTATCTCTGCACCACATCTAAATGAAGAACAATCAAAAGCTGTCCACACTATGTTGTCTATGCAGGTTAAAACTTATGTAGAAGTTCTTGATCATCCGACAGATGAACTAAAAGGAGTGGGAGCCTTGGCTAAATTCATTACAGAAACCTACAAGGTGTTCTTTAAGCGTGCTGATGTTggctctctaataatcattttgaattgccaaaagatagaaagtcttgagcttttgtggaatgacactctctctggtcaccttgataaagtggcagagcggtacctagtaactagtgaaatgaagcagagcctcaacctggagacagtcaaattaaaggcaaccattgaagaggaaaactacttgaactgtaggaagattcttatggGTTGTTCAGgagaagcagacagaactcctttattttctcaacaaggtggtcttgatccagaaactagcatgattgggaaagctacagctggagttgaagaggaagtactcagtctggataaccaagaggacacagactggttgacaagaacagaaaaggcaagaCTTTCACATGACCCTCGTGCAAGTCCTTCAAATCGACAAAACAGCACCTTTAGAGAGTTGAACGTGAAGCCTTCAACTTCACAGCAGTGTAGTATCTTAGTGGAAGGTTTACCAAATGATGCAACCAAGGATCTTGTGTTGAATTACTTTGAAAATAAAAGGCGATCAAAAGGAGGTCGCGTCGTCGACGCTGACATGAATTCTGATTCCAGAACATGTCGTGTCATCTTTGAATCTCCAGATGACGCCATCAGAGTAGCCGAACACTCTCCTCACAACCTCTCTGGCACCTGTCTTAGTGTGTCTCTTATCAAAGAATTTGAGAAGGAGGAAGAGGATCACAGCATTGAAGAAAACACAGAGGAAGTGGAGGATAAGCTTACCATAATCGTAAGCGGCCTCAGGTCTACAACTACAAAGGATACCGTTTTTGATTACTTTGAAAATTCACGCAGATCGGGAGGAGGGGAGGTTCTCAACGTTGATTTTAATGAACAGGCAGATGCTGTGGTAACTTTCCAGGAGGTGAAAGATTCCAAAAAACTGCTGGAGGGCAGGCACAAGATAGATGGAACACCTATCAAGGTTAGAGTGCAGCCTCCCAAGAAAAAGGTACCTCCTGACCCTGTCATGGTACATGAGCAAGGCCTCAGCCTCGAGAAGACAGGTAAAGACTGCTTGGAATTATACTTGGAAAAATTTCCAACGATAACGCTCTTGCCGTCTTTGATAGCGAACTAG

Transcript

aint_s0105.g11.t1

AATAACATTTTGCATTTTATGCAAGgtttgtgctcattggtgaaatgatgtcacaagatgaagtacctgaacaagtagatgcagtgcagatttcccaggagcaaatattaaacattactctactagcaagtgaatggaagtcatcagctggtggtttatcaacattaaatagggaacttgcaattcatctgtcacagataccaaatgtaagagtttcactgtttgttccagaggatgcttgtaaagatgaagacaaaagggaggctagatcttttggtatcagtattcttgatgcagagaagtgtgtgggttttgagcctcttctttggttgagcaacccacctcaagatcacaaaatagatgttattgttggacatggtgtaaaacttggtcgtcaagtacaatttatcaaaagacattcaaaccttgagaactgtaagtgggtacatgtggttcatactgctccagaagaactgggcaaatataagggctactgtagcccaattttgagaggtgaaaagaagcactggtttgaggttgatctttgtaagtgtgctgaccttgttgtgccagtgggaccaagacttggtggcgcttatcgtttgtatttgaaaaaatgtaaagaagatgaggacttttttgagcttactcctggtctttttgagcgtgagttaggagatttacctgcaaagcaaaaccccaaagatgagaaggatgatttcattgtgttgttgtgtggacgtggtgatgaagaggattttgaattgaaagggtacgacattgctgtcaaggcatttgctgatcagcgactgaagggaaaaaattactctttgctgtttgttggtgcacctgaagggaggcaggatgaggtcagggaaaggcttctcaaaattacaaatgaaggaattacaaatgaaggaattacaaatgaacaactgacagtgagagagtttgtaaagagcagagaaagaatgaaggagctcttttgtgaagtggatatggtcatcatgccttcaaaatctgaaggatttggccttgttgcccttgaagccctgtcagctggtttacccattcttgtagggaaaaactcaggatttgcaagagcaatagaggtcattccacttggatcatacagtatagttgattcagacgatcctgctaaatgggctgaatgtgttgagggtgttcgtgttagacacaaagtggtccttcaagaaaataaaatactgaaagaacattatggcaaggattactgttggaagaaacaatgtgaagaacttgttgacagattatggaagatggtttATGgctcctgtactgctcaggctgttgcagcaggtgactgggttgaaaatcagcagagtgcaatcctacaatcattttgttcgcctgatcaaagaacatttcaacagcatatggaagaaggtgcaattacctcaggaagccaaaatgcaaagaagtcgggcaaaaggaaaatttcagaatccaATACTGAGCATGGAACACGGTTGGATGAGAAACTTGGCAAAATACAAAGATCTAAGCAACAGTTGCCTTCAGTTTCATCAGAGACATTTCATGAACCTCATTCAGTGCACAAAAATAAAATTACTGAAATGGAGAGAGCCTTGGCAACATATGAAAACAAAGAGCACTTAAGAGAATTTGGAGAGAACCTTATCACACTTCTTATCTCTGCACCACATCTAAATGAAGAACAATCAAAAGCTGTCCACACTATGTTGTCTATGCAGGTTAAAACTTATGTAGAAGTTCTTGATCATCCGACAGATGAACTAAAAGGAGTGGGAGCCTTGGCTAAATTCATTACAGAAACCTACAAGGTGTTCTTTAAGCGTGCTGATGTTggctctctaataatcattttgaattgccaaaagatagaaagtcttgagcttttgtggaatgacactctctctggtcaccttgataaagtggcagagcggtacctagtaactagtgaaatgaagcagagcctcaacctggagacagtcaaattaaaggcaaccattgaagaggaaaactacttgaactgtaggaagattcttatggGTTGTTCAGgagaagcagacagaactcctttattttctcaacaaggtggtcttgatccagaaactagcatgattgggaaagctacagctggagttgaagaggaagtactcagtctggataaccaagaggacacagactggttgacaagaacagaaaaggcaagaCTTTCACATGACCCTCGTGCAAGTCCTTCAAATCGACAAAACAGCACCTTTAGAGAGTTGAACGTGAAGCCTTCAACTTCACAGCAGTGTAGTATCTTAGTGGAAGGTTTACCAAATGATGCAACCAAGGATCTTGTGTTGAATTACTTTGAAAATAAAAGGCGATCAAAAGGAGGTCGCGTCGTCGACGCTGACATGAATTCTGATTCCAGAACATGTCGTGTCATCTTTGAATCTCCAGATGACGCCATCAGAGTAGCCGAACACTCTCCTCACAACCTCTCTGGCACCTGTCTTAGTGTGTCTCTTATCAAAGAATTTGAGAAGGAGGAAGAGGATCACAGCATTGAAGAAAACACAGAGGAAGTGGAGGATAAGCTTACCATAATCGTAAGCGGCCTCAGGTCTACAACTACAAAGGATACCGTTTTTGATTACTTTGAAAATTCACGCAGATCGGGAGGAGGGGAGGTTCTCAACGTTGATTTTAATGAACAGGCAGATGCTGTGGTAACTTTCCAGGAGGTGAAAGATTCCAAAAAACTGCTGGAGGGCAGGCACAAGATAGATGGAACACCTATCAAGGTTAGAGTGCAGCCTCCCAAGAAAAAGGTACCTCCTGACCCTGTCATGGTACATGAGCAAGGCCTCAGCCTCGAGAAGACAGGTAAAGACTGCTTGGAATTATACTTGGAAAAATTTCCAACGATAACGCTCTTGCCGTCTTTGATAGCGAACTAGGTAGCAAATAAAGGAATACTATTTTT

Protein

Uniprot

Uniprot term	Description
D5UJ42	D-inositol 3-phosphate glycosyltransferase OS=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134) OX=446466 GN=mshA PE=3 SV=1
Q5YP47	D-inositol 3-phosphate glycosyltransferase OS=Nocardia farcinica (strain IFM 10152) OX=247156 GN=mshA PE=3 SV=1
A1R8N8	D-inositol 3-phosphate glycosyltransferase OS=Paenarthrobacter aurescens (strain TC1) OX=290340 GN=mshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20706	GT4-conflict	Family 4 Glycosyltransferase in conflict systems	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR052056	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010629	Biological Process	negative regulation of gene expression	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan