Gene detail

Detailed information of aint_s0106.g7.t2 in Acropora intermedia

Genomic Location: sc0000106_pilon:81096...92177
NR annotation: CAH3030214.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0106.g7.t2

GTTAGTGGGGTTAGCGAAGATACGCTTCTCTTTTCGTTCGTAAATCAAAAGAAAATGACCCTGTACTTTCTTTAGCTTTGGTGTTTTTGGTGAAAACTGTGCTGAGAATGCCAGCTTGTGAGTTGGAATTGTGTGATATTGAAGATGCTGTGAGCAAAGATGATATTACACCTAATGATCGTATAATTCATCGGAACATTGTCCTTCCCAAGACAAGACTAAGGTCCGCACGGAAAGTTAATGATGAATTACCAGTGGGGGACAGTATCATTCCTGGAACTCAGAAGATTTACATCAAAACCTGGGGATGCTCACATAACAACAGTGATGGTGAATACATGGCAGGACAGCTAGCTGCCTATGGATACAAAATTACAGAGGATTCAGGTGCTGCAGACTTGTGGTTGCTAAATAGCTGCACAGTGAAAAATCCATCAGAAGACAATTTCAGAAATGCAGTAAAGAAAGCGCAAGAACTTGACAAACACTTGGTGGTGGCAGGTTGTGTACCTCAAGGACAACCAAAGCATCAAATCATCAAAGGGATCAGTGTGATTGGGGTGCAGCAGATTGACAGAGTAGTGGAAGTTGTGGAAGAGACATTAAAAGGTCATACTGTAAGGCTTCTTGGTCAAAAGAAAGTGGCAGGAAAGAAGACTGGTGGAGCACCACTTGATTTACCAAAGATAAGGAAAAATCCTCTGATAGAAATCATAGCAATTAACACTGGGTGTCTCAACCAATGTACTTATTGCAAAACAAAGCATGCTCGTGGAGATTTGGGAAGCTACCCACCTGAGGAGATTGTTGCCAGGGCTAAGCAAGCATTTGAAGAGGGAGTCGTGGAGTTATGGTTGACCAGTGAAGATACAGGAGCGTATGGTAGAGACATTGGTGTGACATTGCCTGAGTTATTGTGGCAACTTGTGGAAGTTATACCAGAGGGAGCCATGTTGAGGATTGGAATGACAAATCCACCATACATTCTGGAACATTTAGAGGAAATGGCCAAAATTCTGAGTCATCCCCGTGTGTACAGTTTTCTACATGTTCCAGTGCAAAGTGCTTCTGACAGTGTGCTTGCCGACATGAAAAGAGAATATTGCGCGGATGATTTTAGAAATGTTGTTGACTTTCTCAAAGAGAAGGTCCCCGGCGTCACCATAGCAACGGATATAATCTGTGGTTTCCCGACGGAAACATGGGAAGATTTCCAGGAGACAGTGGCGTTGGTGGAGCAATACAAATTCCCCAGTCTCTTTATTAATCAGTTCTACCCTCGACCAGGGACTCCTGCAGCGAGGATGAAGAGACTTCCAACAGAGGAGGTGAAAAGGAGAACAAGGGAGATCTCTAAAGTATTCCATTCCTATCAACCATATGATCACAAGGTTGGAGAACGGCAGACAGTTCTCATAACAGAGGATTCAAAAGATGGAGCTCATTTTGTTGGACATAATAAATATTACGATCAGGTCCTCATTCATAAGAGTGAAGGAGATCTGATGGGCAAAATGGTTCAGGTGGAAATTTTATCTGCTGGAGAACACTTTCAAATGGCGCGCATGCTCCATGAAATGGCAGTGCTGTCGCCGGGGTCAGTGGAACCACTCCCCAAGGGCGCGGTCAGCGGTTTAAGAACTAGGCATATGCCTACTGACATTGTACAGAATGGAGAAGACCCTTGGAGTAATTGGAAAAGAGCGGCAATGGTTGTTCTTTTAGCCGCAGTTTTATTTGATGTTTTAAGACTTCTGTATCTGTGGAAGTACAAATGACGAACTACGGCTCTTTTCGTTTTTCACCCTGATGTCTTTAGCTTTCATGACTAAAAATTGCAAGCTTTCGGCTGAACTCTTTTGTTTGCGTTAAGGTAAACAGTTTATCCGTTACTACTTTATTGACTTCTAAGTCTCTTTGCTAACTTTCTGTGTCGAGTACTAACAAGAGAAGTACGCCAGTGTAAAACGATACATTTTGTTTTTTTTAATTACATTAAGATATTTACAATGTAATACAACCTACTTACAACA

Protein

Uniprot

Uniprot term	Description
Q6NS26	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus laevis OX=8355 GN=cdkal1 PE=2 SV=1
Q91WE6	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Mus musculus OX=10090 GN=Cdkal1 PE=1 SV=1
Q6P4Y0	Threonylcarbamoyladenosine tRNA methylthiotransferase OS=Xenopus tropicalis OX=8364 GN=cdkal1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF01938	TRAM	TRAM domain	Domain	Interproscan
PF00919	UPF0004	Uncharacterized protein family UPF0004	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007197	Domain	Radical SAM	Interproscan
IPR020612	Conserved_site	Methylthiotransferase, conserved site	Interproscan
IPR002792	Domain	TRAM domain	Interproscan
IPR013848	Domain	Methylthiotransferase, N-terminal	Interproscan
IPR005839	Family	Methylthiotransferase	Interproscan
IPR006466	Family	MiaB-like tRNA modifying enzyme, archaea/eukaryota	Interproscan
IPR023404	Homologous_superfamily	Radical SAM, alpha/beta horseshoe	Interproscan
IPR006638	Domain	Elp3/MiaA/NifB-like, radical SAM core domain	Interproscan
IPR038135	Homologous_superfamily	Methylthiotransferase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11918	RADICAL SAM PROTEINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035598	Molecular Function	N6-threonylcarbomyladenosine methylthiotransferase activity	Interproscan
GO:0035600	Biological Process	tRNA methylthiolation	Interproscan
GO:0035596	Molecular Function	methylthiotransferase activity	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15865	CDKAL1; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1	EC:2.8.4.5	Transfer RNA biogenesis	ko03016	deepkoala