Gene detail

Detailed information of aint_s0116.g11.t1 in Acropora intermedia

Genomic Location: sc0000116_pilon:164946...172713
NR annotation: XP_029189476.2, zinc finger protein 76-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0116.g11.t1

GCGCGGCGACTTAGCAAGATTACAAGTTTTCTTTAGTTTGAAGATTTGACAGCAGTTAGCAAATGGTGAAAGCAAGTTAACAAAGAACCATCCAAATAATGTCAAGTGAGGAAGAAGCCACAGCAGCCAATGTGCTGTCACAAATGTCACAGATCCAACAGATCAGCTGTGAGACAATTGAGGCCACTGTAATTAATGTGGGGCATCACTGTGACGTAGAAACCACAGCCACTCAAGTTATGGAAATACAAATGCAGGGAGAGGTTCCTGTTGTGGAAGGCAGTGAAGTTCTTCAACAGGTGCATGCAGTGACATCTGCTGAGAAGGTGCAGCAACCAGAGGCTCCAGTTGTTGGCAGTAATGAAGCTCAGCTTGAATCTGGTCAAGTGGCTATAACTATTCCAGTAACAACGGCACCCTCCGCAGTTGTTCCAACAAGAATTACTACAGCAGGAGGAAGAGTGTATGCTTGTGAATACTGTGGCAAGGAGTTTAACAAATCATACAACCTGAAGACACATATACGTGTTCACACTGGTGAAAGACCTTACCAGTGTGAGGAGTGTGGACATGGATTCGCAAATTTGGGTGATCTAAAGAGACATGCACGAACACATACTGGAGAAAAACCATTTAAATGTGAATACTGTGGCAAAGTATTCTCAGATTTTGGAAGTCATAAGCGTCATCTACGCCTTCACACAGGTTTTAAACCGTTTCGGTGCGAACACTGTGAGAGGGAATTCACTCGTTTAGACAGCTACAAGAACCACATACGGCTTCACACTGGTGATCGACCATACAAATGTGACACATGTGCAAAGGAGTTCAACTATCTCACTACATATAAACGCCATTTAAATATACACAAAGGAGAGAAGCCATTTGCCTGTGAGCATTGTGACAAGAAGTTCACCCGCCTTAACTATTTGAAAAACCATCTTAATACTCATGCCAAACACTCCAGTCAAGAAAGCCAGACAGACTTCAAGTTTGATGGCAATAACACTGATGCTACCATGAATGAAGATTGTCAGGAAACGATGGGTGCTATGGCAGAGGAGACTGTTGCTGCTCACAGCATAAGAAATGAGAGCAAACATGATGTTGAGCTTGATAAAGAAGATGAACGAGAGCTTGGTTCAGCCACGGAAAAAGCACAGGGGGATGATATCCCAGATGCAACCAAGCCATCAGAAACGAAAGTACTGGATGCATCTCTTCTACAACAAGTTACTCAGGTTTTGGGGGAAATTGTTCCTCACAATCTAAGTGCAGAGCTTACAGAAGGAAATGGGGGACCCCAGATTGTAGTCCAAGGCGCAGACCATGAAGGAAGTGAGTTTAAAATCACCCTTGCACAGCAGTTACTTCTCGCTCAACATCTACTGAACCAGGTACAAACACAGAGGCATGGTCAGGGAGGAAGTGGTAGTGAGGATGGTGAAGCTGGCACGGAACAAGCGCAGATTGCAACCGTATCCATTCCTGAGCTCACACCTGAATTAGCCGAGCAGATTGTCAGTCAAGCTGCAGCGCAGCAAGCTGCTGGAGAACATACCACCATACAGACCAGCACTGGGGAGGGAATCTTGATACAGAGTTCCCCTGGGGTGTTGCATGTCCCTGGAGAGGGCACTTCTCAAGGAACTAGGCAAACAGGAATGGTTATTGGAACTGAGGTTATGGTTCATGATGCAAGTGAGGGTGAAGATACAGAGATGGTGACAGAGCATGTATTACAAGAGAGTACCGCCGTCCCTGTGACATCCGAACATGGTGTGCCCCTGGTCGACAGTGAAGCAGTTTATGTTGCTATTGACCCCAGTCAAGGAGATGTCCAGCAAATTTTAGGCCAGATCCAAGCTATCACATCATCCCAATTACAACGGGCGCAAACCAGTGACCAAAACGATAGCAACTAAGAAGAAAAGCAATGGAAGCATTAAATCTCTTAAGTTTGATGTAAAGTTCTTTCCAAAGAACATGTCACTTAAAGTAATCAATTGAATTGTTGTGT

Protein

Uniprot

Gene family

Uniprot term	Description
P60319	Probable transcription factor Ken (Fragment) OS=Drosophila yakuba OX=7245 GN=ken PE=2 SV=1
Q292R5	Transcription factor Ken OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=ken PE=3 SV=2
O77459	Transcription factor Ken OS=Drosophila melanogaster OX=7227 GN=ken PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23235	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan