Gene detail

Detailed information of aint_s0139.g1.t1 in Acropora intermedia

Genomic Location: sc0000139_pilon:7852...10308
NR annotation: XP_029179755.2, E3 ubiquitin-protein ligase TRIM71-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0139.g1.t1

CGACATTCGATCAGTGGCTCCATAtaaggtgtgttcaaccttaatattgatatcttcccgcatttaacatggatatcaaaacctttctggacaatatttacgaacatgtatgctgtcccgtgtgcaccaataggttcactaatccaaaactgctcccttgtttgcacacgttttgccttcactgtctgcaaagaattcaagcaaccagcggaattcaagatactattttatgccccgagtgtcgtcgaaactacaccatccctggaaacggtgatctcaatactttaccgtcaaactttcgcttgaacagtttgttggacgctttgcccgtcacacagtgcgaaacaagtggcgtcaagtgtggaaattgcgacaaaacaagacaacaatctgcctactgcttcacttgttgttcgttctggtgcgataactgccttcctttccataacgggataaaaaccaataaagaacaccacgtgttggctttgaaagattttcgagatgaagactttgagaacattctcaagcagccaccgttttgtgcaaaacacgagaagaaattagagttcttctgtcaggtttgtaaaacaacaatatgttattcgtgtgctgtgacagatcacgatggtcacgctaagattgttttggaagacgctgcaaaagaacgcaagttgagaatagttagagccgttgaattcaagaaacgaaaagcccaaaacaaggtgacaagaattgcgaaacttggtgaaaactgtatccaagttcaagaagaagccgcaagaataatgagggacatacagcagtttactgacaatctcatcgcagccattgaagcgaaaatgtacgagatctttaatgaggtagaaatgaaagcaaaacagtgtctggagcgtctaggagagaaaaagcaggagattgaagaagaaatgaaaagggaccaaacagcaatcgaaaaaagcgacatgattttaaagcgaagcacaagcgctcaaatcatgcaaccaaatgattttctagacgaactatttcgggaggaaggtgagcaagaagacacagatgaccttgacggtgaacatgtcattgattttgcttttaaaggaaataaagaattgtttaatgacgttcacgccaaaaccctgggctttttgaaaagcagaaaaactaacccgaaagagtcgacggttgagggaaaaggaatcagcgaaggaactattggacttaaagccgagattgttgtcaaaacaagaaacattctgggagaacaagtctaccatcaaaataaccgcgtaacgatggaaatcagaaatcatgaaggacatcactgttcaaccaaaccgcaaattcatgacaacaaagatggcagctataagatcagctactttgccaaagaaagcggatcatgtcaggcatctgtgaaagttaatgaacaacatgtgcttggcagtcccttcagaactgaattgaaacgcagactgttcaagcccgtgctatcctttcgaaaacgaggatcggctactggatccaaaggactttgggggatggcagtgaatgacaaagatgagattgtagtgactgattgttataaccatcgcatactcatatttaacagtgatgggactcacctaagatcgtttggtacacaaggtaatcagcagggacagttcaaccatcctcttggggtagcttttcataataacaacattatagtgtcagactctgataaccatcgagttcaaatctttgatgatcagggacactatgttgatcagtttggagaatttggaagacagctggatcatcatcttgaccgtcctcgtgggctgtcgattgacagcgatgacaacgttattgtcaccgattctggtaacggatcaatcaagatctttacacttgatggtcggtttttgcgtagaatcggcggttctttccgcgatcccgttcactTACCGTTCCTTTGAGGAAAAGACTTCATTAAATAGTAGCAAATAAC

Protein

Uniprot

Gene family

Uniprot term	Description
Q5BIM1	E3 ubiquitin-protein ligase TRIM45 OS=Bos taurus OX=9913 GN=TRIM45 PE=2 SV=1
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
Q9ESN6	Tripartite motif-containing protein 2 OS=Mus musculus OX=10090 GN=Trim2 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047153	Family	TRIM45/56/19	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan