Gene detail

Detailed information of aint_s0144.g29.t1 in Acropora intermedia

Genomic Location: sc0000144_pilon:425065...436715
NR annotation: XP_029204216.2, uncharacterized protein LOC114968258 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0144.g29.t1

ATGATGGCCGACCGGAAAGGTCGAAGCGTCACCTTTAAGTTGCCATACAAGATGAATGCTGGTGTACTGAAGACTTCGATTGAAAAGGATGTTTCTTCGTCTATTACTGTGTTTCAAGATCTGGGGAATAACGAGTATCTTGTAGAGCTGGATTCTAAGGAAGGAGCTGATGCACTTATTGACGAAGGTTTTGATTTTGAAGATGTCCATGTTGGTGTTCATCCCCCGCATGGTTGTTTTACAAATGTCAGTATTTTGGGGCTTCGTTCGTATGTTGAGGATGAGATGGTTCTGGAGTCATTATCGCAATACGGTGAGGCTAAAAGTGATGTTATTAGATTAAAGTATAGGGCTGATCATGACCTTGCGGGAATTGAAAATGGTAATCGTTTGGTTAAGATGGTTATCACAGCGAAATCTATTCCGTACTCTATTAGAATTGGTGGAGAGTGGTGCCGCATAATCCATAACAATCAGCAGTCGGTTTGTAATGAATGTAATGAAGTCGGGCATACAAGGAAGCGCTGCCCTAAGATTGAATGTAGAATTTGTAAGGAAAAAGGCCATATGTCATACGTTTGTAGTCAAAGGGATACGCAAATATCTCACGAAGTTCCAACAGAAGATGCGTCTGGCTCAGTTAATGAGAAGGTGTTGTTTACTGAGAATGATCCCAAAGCTAACGAGAAGGTGTCTGTCACTGACGCTGATCCCACACTTAATGAGACTATGTTTGACCCCAAAACTAATGAGAAGGTGTCAGTTACTAAAGTTGATCCCAAAACAAGTAAGAATCCCGTAGATGAAAAGATCAGAGATGATTTTAATGAAGTAGAAATGGAGGAACATGGTCGAAAACGATCATATCCAACGGAATCGGACTCTGACACGAAATTACAAAGGGACAAAAATGAAAAGAAAATCCCGCTTGCTATGATTTCTGTGGATCAGCTAAAGGCCTTCGATCGAGTGGCTCATAGTTTTCTGTTTAAGACACTTGAACGTTTTGGTTTCGGGCCTGTTTTCAGACGCTGGATTCAAGTTATTTATAATTCAGTGTCTAGCTCTGTGAAAACTAACGGTTGGCTTACCGCCTTTATTGCTTTGGAGAGAGGTCTACGGCAGGGTTGTCCCCTGTCCATGCCTTTGTATGTGTTAACGGCGGAAACCATGGCAGTTAACATTAGATCTAACCCCAGGATTCGTGGGATTCTTCCCCCTGGTGCCGAAACGGAGCTTAAGCTGTCCCAGTTTGCGGACGATACGACACTACTTTTGGCGGATGACGAGTCAATCACGGAGACTTTTCATGTTTTTCATCGATACGAGCGCGCTGCAGGAGCAAAGACTAATAAGAGCAAGTGCAAGGGAATGTGGTGCGGTTCGCTGAGACATCGTGTTGATCAACTTTACGGTTTCGACTGAGCATCCTTTGTGTTCGTCGTAATAGCGTTGTGGAATACAAGATCGGGAGGTTTTTTTCCTGCAGTCAGAGACCGTGTTTTGGCTCGAGCTCAAAACAGCGTCTATATTCCTGGAGAGGTAACAGAAGAAGAAGGAAGCTTTTTCTTGGTCACCCTGTACAACGGACAACAAATGAAGCACAGCTACAAGGATATAACAGCAGTTGTGAAAGACACGTTGCCTGCCTGGGTGACGTTAGGAGATCACGTGATTGCGTCACGTCCATCGACAAAGGGGAGTGGGGAATACCTGATAGGCTTTGTGACAAGTGACCTTTGCGAAGGAGATGATGAACTTTATGAGATCACATTTCACAACAATCAACGCGGAAACTGCTCCTTAAAAGACATAAGAAAACTCCCATTCTTCTCTTCGACGCATCAAGTGGGCGCTCGTGTATTTGCTCGTTGGAACGGCACTCGATATCATCGTGGTTTTGTAGCGGAAACAGTTTACGTCGGTCAAGTTCTCCACCTCAAAATTCAACTGAATGACTCAATCTCCGTTTCCCATGCGGCCAGCGACGAACGAGCCATTGTATTGGATGTCATTCCTCGGTACACACAAGTTCACGCTACACAGCGTGTGATTGGTTATTTACCAGGGACTACAGGTTACGTCACTGGCTGGGTAATGAAGAGAAATCCCAACTGTTGGCAAGATGCGTATCTAGTTGTGTTTGATAATGGCGGAGAGCGTGAGGAAGATTTTAACGAGATTCGAATTTTACCACCCTTTGTCCAATTGTTCTGA

Transcript

aint_s0144.g29.t1

TTAGCTTTTTTCGTTTTTTGAAGCTAAGTGATCGCGGATAAGTCGTCAAGTGAAAGAGTTAATTTCACCTTCAGGGAGGCCATGATGGCCGACCGGAAAGGTCGAAGCGTCACCTTTAAGTTGCCATACAAGATGAATGCTGGTGTACTGAAGACTTCGATTGAAAAGGATGTTTCTTCGTCTATTACTGTGTTTCAAGATCTGGGGAATAACGAGTATCTTGTAGAGCTGGATTCTAAGGAAGGAGCTGATGCACTTATTGACGAAGGTTTTGATTTTGAAGATGTCCATGTTGGTGTTCATCCCCCGCATGGTTGTTTTACAAATGTCAGTATTTTGGGGCTTCGTTCGTATGTTGAGGATGAGATGGTTCTGGAGTCATTATCGCAATACGGTGAGGCTAAAAGTGATGTTATTAGATTAAAGTATAGGGCTGATCATGACCTTGCGGGAATTGAAAATGGTAATCGTTTGGTTAAGATGGTTATCACAGCGAAATCTATTCCGTACTCTATTAGAATTGGTGGAGAGTGGTGCCGCATAATCCATAACAATCAGCAGTCGGTTTGTAATGAATGTAATGAAGTCGGGCATACAAGGAAGCGCTGCCCTAAGATTGAATGTAGAATTTGTAAGGAAAAAGGCCATATGTCATACGTTTGTAGTCAAAGGGATACGCAAATATCTCACGAAGTTCCAACAGAAGATGCGTCTGGCTCAGTTAATGAGAAGGTGTTGTTTACTGAGAATGATCCCAAAGCTAACGAGAAGGTGTCTGTCACTGACGCTGATCCCACACTTAATGAGACTATGTTTGACCCCAAAACTAATGAGAAGGTGTCAGTTACTAAAGTTGATCCCAAAACAAGTAAGAATCCCGTAGATGAAAAGATCAGAGATGATTTTAATGAAGTAGAAATGGAGGAACATGGTCGAAAACGATCATATCCAACGGAATCGGACTCTGACACGAAATTACAAAGGGACAAAAATGAAAAGAAAATCCCGCTTGCTATGATTTCTGTGGATCAGCTAAAGGCCTTCGATCGAGTGGCTCATAGTTTTCTGTTTAAGACACTTGAACGTTTTGGTTTCGGGCCTGTTTTCAGACGCTGGATTCAAGTTATTTATAATTCAGTGTCTAGCTCTGTGAAAACTAACGGTTGGCTTACCGCCTTTATTGCTTTGGAGAGAGGTCTACGGCAGGGTTGTCCCCTGTCCATGCCTTTGTATGTGTTAACGGCGGAAACCATGGCAGTTAACATTAGATCTAACCCCAGGATTCGTGGGATTCTTCCCCCTGGTGCCGAAACGGAGCTTAAGCTGTCCCAGTTTGCGGACGATACGACACTACTTTTGGCGGATGACGAGTCAATCACGGAGACTTTTCATGTTTTTCATCGATACGAGCGCGCTGCAGGAGCAAAGACTAATAAGAGCAAGTGCAAGGGAATGTGGTGCGGTTCGCTGAGACATCGTGTTGATCAACTTTACGGTTTCGACTGAGCATCCTTTGTGTTCGTCGTAATAGCGTTGTGGAATACAAGATCGGGAGGTTTTTTTCCTGCAGTCAGAGACCGTGTTTTGGCTCGAGCTCAAAACAGCGTCTATATTCCTGGAGAGGTAACAGAAGAAGAAGGAAGCTTTTTCTTGGTCACCCTGTACAACGGACAACAAATGAAGCACAGCTACAAGGATATAACAGCAGTTGTGAAAGACACGTTGCCTGCCTGGGTGACGTTAGGAGATCACGTGATTGCGTCACGTCCATCGACAAAGGGGAGTGGGGAATACCTGATAGGCTTTGTGACAAGTGACCTTTGCGAAGGAGATGATGAACTTTATGAGATCACATTTCACAACAATCAACGCGGAAACTGCTCCTTAAAAGACATAAGAAAACTCCCATTCTTCTCTTCGACGCATCAAGTGGGCGCTCGTGTATTTGCTCGTTGGAACGGCACTCGATATCATCGTGGTTTTGTAGCGGAAACAGTTTACGTCGGTCAAGTTCTCCACCTCAAAATTCAACTGAATGACTCAATCTCCGTTTCCCATGCGGCCAGCGACGAACGAGCCATTGTATTGGATGTCATTCCTCGGTACACACAAGTTCACGCTACACAGCGTGTGATTGGTTATTTACCAGGGACTACAGGTTACGTCACTGGCTGGGTAATGAAGAGAAATCCCAACTGTTGGCAAGATGCGTATCTAGTTGTGTTTGATAATGGCGGAGAGCGTGAGGAAGATTTTAACGAGATTCGAATTTTACCACCCTTTGTCCAATTGTTCTGATCAGTGCACGAGCTAACTGGTATAGCAAGTGcttatttctagaaatgcacgtaattagatgtaggtacaattgtttccagttaaatctaaacgtgaaccccttgccaatgcttgtaacttaaggcttagcgtatatgttcgggttattattttaagttgggattggggtgactgtttctgtctccttgagggttatagttgggacgacactttgacttttactgcccgtgtctcttgccacgagtgataaggaaacaaacagggtggagggacatttcgttacgctcattggaatcggcttcatgtaatttagtacaataatagacgtgtctcatT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR052343	Family	Diverse Retrotransposon and Effector-Associated Protein	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46890	NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan