Gene detail

Detailed information of aint_s0148.g28.t1 in Acropora intermedia

Genomic Location: sc0000148_pilon:655466...682104
NR annotation: XP_020619082.1, uncharacterized protein LOC110056874 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0148.g28.t1

ATGTACCGTAGAAATGCATTAGATCGGCATCTACCAAAAGCCCTAATCTGGGCATCAGGCGTGCCCTTGGAAAAAAAATTCGTGAAATGGGAGAGATATCTGGCCAGCAAAAAAGTGGACCGGGAGAGGTTCCCCTTAAATTTAAccattgagtatcatgaaaaagatttgaaaattgcaaaagaaatcgatgatcgggccgcagaaggagcagccaatgggaatctcggtaacgcttaccagtcactgggtgactatcaaaaagccattaagtatcatgaaaaatttttgaaaattgcaaacgaaatcggtgatcgggccggagaaggagcagcctctggaaatctcggtaacgcttaccagtcactggctgaatataaaaaagccactgagtatcatgaaaaagacttcaaaattgcaaaagaaattggtgatcgggccggacaaggacgagcgtatggaaatcttggtaacacttaccagtcactgggagactataaaaaagccgctgagtatcatgaaaaagatttgaaaattgcaaaggaaatcggtgatcgggccggagaaggacaagcctatggaaatctcggtaatgcttaccgcgcattgggagaatatcaaagagccattgagtatcatgaaaaatatttgaatattgcaaaagaaatcggtaatcgcgccggagaaggacgagcctatggaaatctaggtgaagcttaccagtcactgggtgcctatgaaaaagccattgagtatcatgaaaaacttttgaaaattgcaaacgaaatcggtgatcggggtagaaaaggagcagcccatggaaagctcggtaacgcttaccagtcactgggtcaaaatgaaaaagccattgagtatcttgaagagcatttaaaaattgcaaaagaaatcggtgatcgggcgggagagggacgagcctatggaaatctcgatttgaaaattgcaaaagaaatcggtgatcgggcgggagaaggacgcgccaatggaaacctcggtaatgattgccacgcattaggggagtatcaaaaagccattgagtttcatgaaaaagatttgaaaattgcaaaagaaatcggtgatcagggcggagaaggaaaagcctatggaaatctcggaagtgattacgagtcactgggtgactatctaaaagccattgagtatcatgaaaaacgtttgaaaattgcaatagaactcggtgatcgagcgggagaaggacgagcctatggaaaactcggtaacgcttaccgcgcactgggagagtatcaaaaagccattgaatttcatgaaaaagatttgaaaattgcaaaagaaatcggtgatcggggcggagaaggagaatcctatggaaatattggtaacgtttaccagtcactagACCTTGAAGCTCTCCATGGAGCGAATCAGCTTGGCGTGAATACTCCTGAAAGTCTTGTTAACACAGCATGGTTTTACACCATTCTCTATTTTGGAAGGAGAGGCCGTGAAAATCAACGCGCGATGAACCCAGGTGACCTTCAGCTGAAAACAACAATAAGCGGACTGAAGTACTTCGTCTTAAGAGAAAGAGCGACGAAAAATCATCCCGGAGGAGTCAGCGACAACGAAGACGAGAGTCAATCTGTAATGATGGCCTGGCCGGGAAATCCCCGTTGTCCCGTGGCTTGCCTTGAGAAGTACTTGGCAAAAAGAGATCCACGATGCGATGCCCTTTGGCAGAAACCGAAAAACCACAATGGAAGCTCTTTCCATTCAACAGATGAAGTCTGGTTTTGTAATGTACCCTTGGGGAAGCACAAGCTGGAGAATCTCCTGACAGAAATGTGTAAAACAGCTGGTCTTACACATATTTACACTCCCCACTGCATTCGAGCCACGTCGGTAACTGTCCTCAAAGCTGCCGGCTTAGAAAACCACCGAGTAAAGAGCGTAACAGGCCATGCAAGTGATAAATCCATCGAGTCTTACAGTGCTCGACCAACCATTGAGCAACAGTTTGAGTCTTCCGCGATGcggaataataaatctcttattagatggtttaacatataa

Transcript

aint_s0148.g28.t1

ATCAAACATTGTCCCCTGCTGAAAAACCCCTGGGCTGCATTTGAGTTTTCTCTAAAGAAATGAAGAAATTGCTACTTGCTCTTTCAAAGACTGCAGTGCAGAATCATTCGGCCCCTGCTCAAAAGAGACTGCACCACATTATAAATTGTAGGCACATGGTACCCAGCGGCAAGTTTGACTTACAGAAGGTGCACGAATGTACCGTAGAAATGCATTAGATCGGCATCTACCAAAAGCCCTAATCTGGGCATCAGGCGTGCCCTTGGAAAAAAAATTCGTGAAATGGGAGAGATATCTGGCCAGCAAAAAAGTGGACCGGGAGAGGTTCCCCTTAAATTTAAccattgagtatcatgaaaaagatttgaaaattgcaaaagaaatcgatgatcgggccgcagaaggagcagccaatgggaatctcggtaacgcttaccagtcactgggtgactatcaaaaagccattaagtatcatgaaaaatttttgaaaattgcaaacgaaatcggtgatcgggccggagaaggagcagcctctggaaatctcggtaacgcttaccagtcactggctgaatataaaaaagccactgagtatcatgaaaaagacttcaaaattgcaaaagaaattggtgatcgggccggacaaggacgagcgtatggaaatcttggtaacacttaccagtcactgggagactataaaaaagccgctgagtatcatgaaaaagatttgaaaattgcaaaggaaatcggtgatcgggccggagaaggacaagcctatggaaatctcggtaatgcttaccgcgcattgggagaatatcaaagagccattgagtatcatgaaaaatatttgaatattgcaaaagaaatcggtaatcgcgccggagaaggacgagcctatggaaatctaggtgaagcttaccagtcactgggtgcctatgaaaaagccattgagtatcatgaaaaacttttgaaaattgcaaacgaaatcggtgatcggggtagaaaaggagcagcccatggaaagctcggtaacgcttaccagtcactgggtcaaaatgaaaaagccattgagtatcttgaagagcatttaaaaattgcaaaagaaatcggtgatcgggcgggagagggacgagcctatggaaatctcgatttgaaaattgcaaaagaaatcggtgatcgggcgggagaaggacgcgccaatggaaacctcggtaatgattgccacgcattaggggagtatcaaaaagccattgagtttcatgaaaaagatttgaaaattgcaaaagaaatcggtgatcagggcggagaaggaaaagcctatggaaatctcggaagtgattacgagtcactgggtgactatctaaaagccattgagtatcatgaaaaacgtttgaaaattgcaatagaactcggtgatcgagcgggagaaggacgagcctatggaaaactcggtaacgcttaccgcgcactgggagagtatcaaaaagccattgaatttcatgaaaaagatttgaaaattgcaaaagaaatcggtgatcggggcggagaaggagaatcctatggaaatattggtaacgtttaccagtcactagACCTTGAAGCTCTCCATGGAGCGAATCAGCTTGGCGTGAATACTCCTGAAAGTCTTGTTAACACAGCATGGTTTTACACCATTCTCTATTTTGGAAGGAGAGGCCGTGAAAATCAACGCGCGATGAACCCAGGTGACCTTCAGCTGAAAACAACAATAAGCGGACTGAAGTACTTCGTCTTAAGAGAAAGAGCGACGAAAAATCATCCCGGAGGAGTCAGCGACAACGAAGACGAGAGTCAATCTGTAATGATGGCCTGGCCGGGAAATCCCCGTTGTCCCGTGGCTTGCCTTGAGAAGTACTTGGCAAAAAGAGATCCACGATGCGATGCCCTTTGGCAGAAACCGAAAAACCACAATGGAAGCTCTTTCCATTCAACAGATGAAGTCTGGTTTTGTAATGTACCCTTGGGGAAGCACAAGCTGGAGAATCTCCTGACAGAAATGTGTAAAACAGCTGGTCTTACACATATTTACACTCCCCACTGCATTCGAGCCACGTCGGTAACTGTCCTCAAAGCTGCCGGCTTAGAAAACCACCGAGTAAAGAGCGTAACAGGCCATGCAAGTGATAAATCCATCGAGTCTTACAGTGCTCGACCAACCATTGAGCAACAGTTTGAGTCTTCCGCGATGcggaataataaatctcttattagatggtttaacatataatactcgcggacattttgctcattgctcagaaaaagtccggataatcgaaaagt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12012	DUF3504	Domain of unknown function (DUF3504)	Family	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR052386	Family	G-protein-signaling modulator	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR021893	Domain	Domain of unknown function DUF3504	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954	LD33695P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15837	GPSM2; G-protein signaling modulator 2	-	Cilium and associated proteins	ko03037	deepkoala