Gene detail

Detailed information of aint_s0159.g27.t1 in Acropora intermedia

Genomic Location: sc0000159_pilon:863914...873916
NR annotation: XP_029198290.2, tRNA selenocysteine 1-associated protein 1-like [Acropora millepora]
Species abbreviation AINTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aint_s0159.g27.t1

CCGAGGGAGTCGACCTTGTTGGGTCATTTTTTGGTGGCAAATGTTTCAAAATTTAGAAAATACCGTTAAGAGATGAGGCAAGGCCGAATGAGAAAGAATGAAACCTTTGGATTGGGAATTCTGTAAATACTTATCTTGTATAGAAGCCTTGTGACGTAATTTGCTCGCGTTTACAAAATAACAAATTAACAATACTGAaaagaagcctaagccgtgtattacactgtcataaaacacgtcggacatttgaggataataagggaatgtagaaaacacgagccgcacgctcgttaattaaaatgtagaaaacacgagccgtaggtgttctcaaatacccggagtgttgcagtgtaatacacggcctaggcttcctcatctgctttatgatatagagataatgtggcgaaaaacaataaaacacgcctttactatgttttgtactcagataaaaaaaaatgggtttttgaccaatcagagtgcgctcagggtaccatatgtatattgtaGTAGATGATATAACAGTATGTTCAACGAACCCTTAGATTAATATATAATCAGAGCGAATAAGTGTGTAAATAAAGCTGAACAGCAAGCCGAAGTAGTTGCTCTCTACAATGGCTCTCTCGCGCCATCCGAGCTTTGCGCACGCATCCTAACTCCACGGAAGAATGTGAACTAGTGTGGCGTTACAACTAGGGAATAGCACGTAAGGCTTTTGTCAAAGTTCACGAGAGTGAAAATATACTTTTAACGACTCTAGGTCTTTAAACGCAATCAAATCTTAGAAAAAGTATGAAAAAAATATGCTGTGGTAGGAAAAAATGGTGATTTCGAATTCTGTCACCAGCTTTTCACGAGCGAGAAATAATCTTTTCCGACAGCGGTCTTTTGATGAGACGATAGTGGTTCATGTATGATCAGTCTGGTCATTTGCTTTCAAATTCTGGAACTCGAAGGGAACTTTCTTACTTTATTAAAACGTCGGAAGAATTCGCTTTTACTTTTGAAAAACTGCATTTTCAATAGTCTATTAACATTTTAGATTCGAAGAACCGGTTGTTACGGTTCATTAAGCAACTTTCAAGTTTTCCCAGACGTTGACGCTGAAACAAAGGAACAACACGTGTTCTTCCATATCTTCGCCAGTTTAACTTTTCTCGCGTTGTTTTCTGTCATTAACGAGCAAAATGACAAGTCTTTGGATGGGAGATCTTGACACCTACATGGATGAAACATTCATTAGCAGTGCATTTGCCGCAATGGGTGAAGCAGTTGTGTCTGTAAAGATGATAAAAAACAGGACCACTGGGTCTCCTGCTGGATACTGCTTTGTGGATTTTGGTGATTACACAGTGTCACAGAAGGTCATGGGTAAACTCAACGGCTTGCCAATACCTGGAAGCAATCCTATAAAACGATTCAAGTTAAATTGGGCTACTTATGGCAAGGAGTCTTTCATGCAGGGACCAGAGTATTCCATATTCGTTGGTGACTTATCCCCAGAGGTTACTGATTATGCTCTTCAGGAGTTCTTTCAAAGAAAATTCCCAAGTTGTAAAGCAGCTAAAGTTGTTCTGGATACAGCGGGAAATTCCAGGGGATATGGGTTTGTACGGTTTACCGATGAGAATGAGCACCGACAAGCCATGATTGACATGCAGGGAGCAATGGGTTGTGGGTCAAAACCTCTGCGGGTCAGTGCAGCCACACCCAAACGACCTCAAACCACTGCAACCAGCACACCAACGGCATACACTACCACTACTGCAACGAACCAGCAATACGTGCAACAGTATCAGCAATATCAGCAATATCTGGCTGCATGGCAAGGATATCATcagcaacagcaacagcaacaacaacagcagcagcaTTATTATCAACATTACCAGCATTACCAGCCATATGCACATGCAGCTTATCAGCAACCAACGAGTTACGAAGAAGCAGCTGTAACAGTGGATAACACAGCTGAAGACCCCAACCCACCGTTGAACATTACTGAAGAAAACAAAGCTATAATAACCAACGAATCAGAAAACTACTTCGAGATGGAGCAATCCAGATGGCAAAGTGTAGAATCTCTTGGTTCAGGACCGAAAAGTCTTGTCACATAGCTATGAAAAACATTCAGGGATACGCGATTCATGTTGCTTGCGAGACAATTAAATGCTTGCTTTGTTCCTCTCTGCTTGTTCTTAATTTTAACGAATATCTTTTCCCGTTTTGTGGTAATCACGCAAGTACACATTGTGATACTCTTACGCATATTTTGTCGTGTTGCGCGCTCGTGTTTTAACCAAATATTGTTCTTGCCACACAATATCTTTGGGAGGATAGATTGCTTGACGATGAGTTCATCTTCAGAGGGGATCATTCTCTTACCTGGGGACGGGATGGGACAGGACGCGCCGAAATTATTGGAAAAAGAGCCATAAGAACGAGGTTGAAAAACTTTTGTTGGAAATAAATGCCAGACATGATGTAGCTGGCTATGTTAAATTGTTTTTGACGCAACTTCGTTTCCGAGCTTTTTTACCGTCCTGGGGCTTAGCGCAAAGAAAAGTCATGGGACTTACTTTCACTTAAACGAATAAGATGGTGTTTTGCTTTACGCCAAAACATTATATTGTACTTCAAGAGCGAAAGGTTGTACAGAATGCATTTCCCTGGCCAGCGAATCTCAGACAACTTTTTCACCTTAATTTTTCTCCTTTTTACTTCACAAATTGTTTACACTTTTGACTTGGAGAAATGACAGAATGTTCACGTTGTAGTAAGTATCGTAGCTGTTTTTTTCTTTTACAGTTATGAAGTGTCTTTTGCAAAGTATACAATAAATTACCACATGAACAACACCATTTTGTCAGACATCTTTTTGATGCTTGACACTCTAAATGAACAAGTTTTAGTGGACGATTTGCAATTTTACTTTTACACATGTTTCAATTCGGACATAACTCGCTTCGTGGTGTAGTTTTCTAAGTAGTGTCGCAATTAAAATCGAAATTTGAGGGGAATTTGTTCAATCAGCGAAATTAATTGATTACAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RMJ7	tRNA selenocysteine 1-associated protein 1 OS=Bos taurus OX=9913 GN=TRNAU1AP PE=2 SV=1
Q9NX07	tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens OX=9606 GN=TRNAU1AP PE=1 SV=1
Q5R462	tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii OX=9601 GN=TRNAU1AP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17654 all species →	Trnau1ap	Selenocysteine tRNA 1 associated proteins	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR041085 all species →	Domain	tRNA selenocysteine 1-associated protein 1, C-terminal	Interproscan
IPR040434 all species →	Family	tRNA selenocysteine 1-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37457 all species →	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0001514 all species →	Biological Process	selenocysteine incorporation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25102	TRNAU1AP; tRNA selenocysteine 1-associated protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.