Gene detail

Detailed information of aint_s0166.g23.t1 in Acropora intermedia

Genomic Location: sc0000166_pilon:590104...592120
NR annotation: XP_015773406.1, PREDICTED: protein fem-1 homolog B-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0166.g23.t1

CTGAGTGAGCATTTTTCAAAAAATACAAAGAGACAAAAAAAACATAACACCGTGGAATCTCAAAAAGCTAGCGGATAGTATGGATGGAAACCTGTCAAGAAGTGAATACATTGATTTTGTGGCTATATTGTACAAAGCTGCTCGGGATGGTGCGGTTGTTGTAGTTAGTGATGTTCTTCAGCGGATGAGCATCACTGAAAGAAGCACCGCTTTAGAAACGAAAACAAAAGATGGTGACCAATTCACCACTCCTTTAATCATCGCCGCTCGTAATGGAAACCTGGCTTCTGTGAAGGTGCTTCTAAGATACAAAGCAGACATGGAAGCTCGAGGAACTTTGAAAGTTCACAACCAAGTTGTTGGGGGTTGTACACCTTTGTGGGCGGCCGCTGCGAGTGGAAATCTTGATATCGTGAAAATCCTAATCGAAGGAAACGCAGACGTCAACGGGAGAACCTCTTCAAACTCGACTCCTTTAAGGGCAGCAGCTTACAGCGGACACCTTGACATTGTGCGTTGTTTGGTTGAAAATGGAGCCGATGTAAATGCACGTAACAAGTCTGAGCATACCGCATTGATGGTAGCATGCTACAATGGCCACAGCCAAGTCGTAACCTACCTTATCGAAAGTGACGCAAACATAGATCTCCAGGACAAGGAAGGCAACACGGCTCTGCACGAAGCAATTTACAAGGATCACTTTGAGATTGCTAAGGAATTGGTCGCTCTTGGAGCGCCCCAGTTCCCAAATATTCAACTTTTAACACCACTTCTTTTAGCAAGTAATAATTGCATGATTGACATGGTTGAGTATCTCACAAAGAGACCGGAATGTACAAAGGAACAGAGAATTGAGGGACTTGAGCTTCTTGGTGCTACTATTGCCAATGTACTTTATGCTTATGATATCGAGAAAGCATTTTCCTACATGAAACGTGGTATGGAAGAAAGGTTCCAAGACGACTCGTGTCCCCTTCTCAAAAAGCAAATAGAACCTCTTGAAGTTTATGAGTATAGGAAAGAGAGTCAGACTCTTGAAGATTTAGTTCAGTTAGAAGGTGATGATCATGCCATCCACATGGAGGGTCTTATAATCAGAGAGAGAATCCTTGGAACTGATAATACAGCACTTCGCCTTCCATTACTACACCGTGGGGCGGTTTTTGCTGACTCACAGAACTTCGACTTTTGCATTAGATTGTGGAAACATGACATCGAGATAGGTCAGCGTGCTAAGGAGCCAGTAACAAAAGATTTGCAAAGGATGGCTGGTTTATTTAACGAAATGGTTCACAAAGACGTGCTTCTGAGGTCAGAGTGTGTTCAAGGAGTGTTTGAAATACTTGTTACAGAATTTGAGAGACAAACGAAAGAGGAACATAAGGTAAATTCGCTTAAAGGGGAACTAGAACAATTGATTTACTGTGCTCTATATCTATTAATGATATACACCAAAGTCCAAATTCCAGAAAGTAAAGAGACTGCAGGTATTTTTGACTCTATGCAAAGATTCCTTCGGTTAAGCCCTCGCACTCGTGATGGAAATACACTTCTACACTTGGCTTCTTGGTGTAAAACCGAAATTACGGTGCCCAACCCAAACAACTGCCCCATGTGCAAGCCTCCATGCGTTGAGACCATGAAGCTTATTATGCATGCAGGCTGTAATGTCAACGCCATTAACACCAAAGGAAACAGTCCTCTTCATTTAGCTGTGACTTTTGAGCCCAGTAACGAAGATCTTCAGCTCTTAAGGGATGTGTTGGAGACATTGTTTGATGGAGGAGTACACGAGGACCTGGTCAACAGTGAGCACAAAACAGCAATGGACATTGCTGAAACTGAAGAAGCACGCAGGATCCTTTCTATGAAGAGAAAACTGAGGTTGAAATGCATTGCTGCCAGAGCTGTAAGAAAATTTGGATTATGTTACGTTAGGATAGTTCCTGAGACTCTTGAAAGATTTATTAGCTCACATTAGGCTTGTTTGTTTAGCTAAGAAAATTCACTTTATGAG

Protein

Uniprot

Uniprot term	Description
Q6GPE5	Protein fem-1 homolog B OS=Xenopus laevis OX=8355 GN=fem1b PE=2 SV=1
Q5ZM55	Protein fem-1 homolog B OS=Gallus gallus OX=9031 GN=FEM1B PE=2 SV=1
P0C6P7	Protein fem-1 homolog B OS=Rattus norvegicus OX=10116 GN=Fem1b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004540	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10349	FEM1B; protein fem-1 homolog B	-	Ubiquitin system	ko04121	deepkoala