Gene detail

Detailed information of aint_s0172.g40.t2 in Acropora intermedia

Genomic Location: sc0000172_pilon:539491...547215
NR annotation: XP_015768912.1, PREDICTED: SPARC-related modular calcium-binding protein 1-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0172.g40.t2

GAAATAGTAGACATTTATCTACCTGTCTTCAAATTGTCATGGATGCCAGAGAAAACTGGGGGGTGTGTGGTGGGTTAGAATGTCTGAACGAAGTGAAGTGTCCCATAGACAATTCTAATTCCAGGCCAGTGTGTGGAGATGACGGAAGAACCTACAGCAGTTATTGTTTACTTCAGCTGGCAAGGTGCAATGGTCATCGTGTCACATTTGTCAAATGGGGAAAGTGTGGAGGTGCAAAACAGATCCCATTGGAAACTGCTAAAACATTAGTACCAAGGCTATCCAAGTGCATGAGAGAACGGAACCAAGCAATTGGACATGCACTATCACATGATCTGATTATGCTGGGTGTTTACATACCAAATTGTGAACCTGATGGTAGTTTTGCCCCAGTCCAGTGCCTCAATGCGTCACGTTTCTGCTGGTGTGTTGATGGTGATGGAAAAGAAATTCAAGGCACAAGAGCTCGATCTAGGCAGCCAAAATGCCTCACACGACCATCAGGTGATGTAGCTACATGGACTCAACAGTTAAACCCTGAAAGACCAACACAAAGGAAAAAAACAAAACCATGTACAAACTGCAAAGGATGTTCAAAAGAAGTGCGTGCTACTTTTACTGAAAAGCTCATAAAATTATTGTTTAAGGAGTTTAATCCCTCATCCTATAAAGCACCAGGTCAACTGGATGTCATGGGAAAGTTTCACATGTTACGTTGGAAGTTTACGCATCTCGACAGCAATGGTGATTACATGTTACAGATTCGAGAGCTTAATGGTTTCTTGAAAATAACCAAGAAGGCTATTCACCCTAAAAAATGCAGCCGTACTTTTGTAACATATTGTGACAGAAATGGAGACCGCAAAATATCAATCGATGAGTGGTATTCATGCCTTGGCGTGAAAGCAATAACAAAGTGTACTGGAGATTATCTGGAAGCCTTGGAAAAAAACAAGCAGTTGACAGGTGCTAGTCGGTCTCTTTTACCAAGCTGTGCAAGTGATGGTTCTTACTTGCCCACCCAATGTCATCAGTCCACCGGATACTGCTGGTGTGTGGATGTTGTCACAGGAAAACCAATTCCTCACGCAACAAAAAATGCAAACTCCCTGACTTGTTCAAAAATAGTGAACAACAAAACTTCAACAAATACAGCAAAGAAAGAATGCGACCAAGAGTTGTGGATATCCTTTAAAAGATACATACTCAAGCTGTTTAGGAAAGAGGTGGAAGAGGATTTGCCTTCAAATAGCAATAGTGAAACAGAAAATTTAATAAGAAGTCAGCGACGAAGTGCCAGATCAGGGGATCTTCGTCTTCTTGGAACTTTTCTGACAGACAATCAAGTGTTAATTTGGAAGTTTAATCGCCTGGACAGAAACAAAGATAAACACCTTGAACAAAATGAATTCCTCACATCTCGCATGAAAAAACACCTTGGACATGTCAAGCGTGGAAGAAAGTGCGGCAAGAAGCTTTTTGAATGTGACACAGATAAGGACAAAAAATTATCCATGGTGGAATGGGCCCTCTGTTTGCGGCCAGGCCGAGTTATCCTTCTGCAATAAAAAAGGGAGCAATTCTCTGATACCAGGAGGAAAAGTAATAGAAAAGCACATCCCTTTCCTGTCAAGAACTGGGGCAATGCTCATGGAAAGGTGACCAAACTGCACAATGTTACTTTCTGTGCTATTATAATGGTTTAGGAGATGTGCTTTAGACATCAATTCCAACCTGCTGAAAACTATCAAGGTTCACTCCAGGAAAGATGCCATGTTCACGTCCCCACACCTGTAACAACAAAGTTGGCTTATATGTTAATAATGCGTGTCTTCAATGATAAAAAATATTGTAATCTTTAAGAACTGTTTTGGAAAACCTGGGTGAAGAGTTGAACTGTAAAAGAAAAAAAATATGTAGTACAAGTTTTCCTTACTGCAGAAGAATTGCGTATGGAGAACTTCCATATGAGAATTCTATTCAAGGTCATGTTATCAGTGGATTTAGAAATTCAATAAGGGATGGTTAAGTTTTAAAATCTTATTTTTCTATCCACAGCACAATTCTTGCATCACATTGATGTTACTGAATCTGTTGCATTAAACAGATCTTTTCTGAAAATAATATTGTAATATGTTGACTAATTTCTTTACCTATTATAAGCTGTACACCAATCATATGCTAGTAATCAGTGTTTCATTCAAGAGGTGGTCTTCCTTTACGGACCATAGTAATGGCGTAATAGGACCATGTAATAAGAAATAGAGGCAAGTTGTTTTAATTATTTACATTGTACGTACATTTAGCTGAACACTGTGTGATGTTCACACAATGCAATTTTAAAACGTCATTACAAAGTTGAAAAAATTAATTTATGAATATTTTTATAGTATTCATTCAAAGCTAAAAATACTTGTCCAAGCTTCCTTAGTCATTGTACAAAAATTTATTTGGCTGCCAAGCCCTTTTAGAAAGAAATGAAGTGTGGTAAGTTTTCTTATAAAGCACTATAACAATACAGTTTCAAGAATTTCCCACGAACATATAAAGAAAGCTTTCATCCTGTAACTGAAACTCTTGGAGGAAAATACTTTTTGTTTTAATTTTTAGCTTTTGAACAGTGTCCCAATATGCAGCTAGAGGTTATTGTCATTATTACACTGAAATGTTTTCAGCCTATAGTCTGATTTAAAAAATTTTTGTCTTCTACCAATAACTTGGttattattattgttattattattattattattattattattattTTTACAGTTTGTAAGGACAGGAAAATAAGGTAGGTTGAAATCATTTCAGCCTGAATCTCATTTTGACTGACAACACATTTTTATCCTGAATGTTTCACTGGTGAAGATCTTCATAAAAATCTTTCCAGCTCCCCATGCAGCAGGTCCAGAGGTAGTTATCATGTAAAATTCAATGGAATTAATTTATAAGAGGTAGAGCCACAGAAACACTATTCGGATCCAGTCCCATGTCTATCAATACCAATCTCACACATAGTATTCTATCCATGAATTATGATGGCTTCATTCTGTAATAATTAGGACAGAATGCTAATAATAATAATAGTTATTATTTAGCCCATATTCATTCCACAACTCAGGTACAAAATTTGTCAAGATCTGTATGGGATTTAATTAATAGTAACTTAACTGAATGTAACAGcagggcttgcaattgcaaccaatacggttgccaatgggattaaaacttccacctaggcgactaaaaattctgcttaagtcgccaacttggcgaGTTCATTTCTGCAAAAGTGAATAAATAAATAAACCATTCAGGTCAAGGAACATGTGTGATTGCTTTATTGGGAAAAAAGGTGGATCAAATCAAATTAATATGTCTGTTTACCTTCGCAAAATGTGGATTTCAGCTTTTGAATTTCAACGCCATGTCATTACCTGTGGTGTTACTTCTGTGTAAATTGTCTTGCAATGAGGGTTAATGTAAAATTTTGAATTTGCTTTCCTGCCTTTGGAGCCCCTATAACTTCTGGTGACT

Protein

Uniprot

Uniprot term	Description
Q62288	Testican-1 OS=Mus musculus OX=10090 GN=Spock1 PE=2 SV=2
Q08629	Testican-1 OS=Homo sapiens OX=9606 GN=SPOCK1 PE=1 SV=1
Q9H4F8	SPARC-related modular calcium-binding protein 1 OS=Homo sapiens OX=9606 GN=SMOC1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00086	Thyroglobulin_1	Thyroglobulin type-1 repeat	Domain	Interproscan
PF07648	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF10591	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000716	Domain	Thyroglobulin type-1	Interproscan
IPR036857	Homologous_superfamily	Thyroglobulin type-1 superfamily	Interproscan
IPR002350	Domain	Kazal domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR051950	Family	Developmental regulator and protease inhibitor	Interproscan
IPR036058	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR019577	Domain	SPARC/Testican, calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12352	SECRETED MODULAR CALCIUM-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005604	Cellular Component	basement membrane	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0008201	Molecular Function	heparin binding	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24354	SMOC; SPARC-related modular calcium-binding protein	-	Glycosaminoglycan binding proteins	ko00536	deepkoala