Gene detail

Detailed information of aint_s0174.g19.t1 in Acropora intermedia

Genomic Location: sc0000174_pilon:187476...196482
NR annotation: XP_029213248.2, LOW QUALITY PROTEIN: centrosomal protein of 78 kDa-like [Acropora millepora]
Species abbreviation AINTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aint_s0174.g19.t1

GCATGTTTTTCTTTTCATGGATTCATATGGCATAATGTGGGGAATTTCTCACATTAAAGGGAGGTTTATTGAAACGATGACTTCCTCTGATTGACCTGACGAAGACATGCAAGATTCTACCAGCTGCTTGTCGAGAAACATAGCACGCAAAGCATGACAATGATCGAAACAGTTCGCCAACGACAGAAGAACTCCACAGATTTTGCATCTTGCTACGACAACCTATGCGCTTTACAGAACTCTTGTCCTCTGGGGTCAATAACTGCAAATTTAGATGAGCTGTTTATCGACTGCAATGCTGATCGAATTCGTCTTTCGGATTGGATTCCAATTTTGAACGCATTGAAGATCAACAGATCGTTAAAATTTGTCGCTCTTAGGAGCTTCTGGCAAGAAACGCTGTATCCAGATGGAGAAGTATCAGAGCAGCGTTTGCAAGCCTTACGAAGAAAAGCCCCAGCTATTCGTAGCAAGGATGTCACTTACAGAGTCTGCAGAACCATAAAGGAATGTTTATATGTGACAGAAAGCTTAAATTCTCTGATTTTCCAAGGAATTCCACTGAGAGAAAGAGATTTGAATTACCTGGCTAAGGGAATATCGAAGAACACAACTCTGCAACATTTTTCATTGGAATTCTGTCAGATCGGAGATAGTGGTGTTGAGATAATTTGCAATGCCATAAAAAATAACACGTCAGTAATGAGTGTTAACTTTACGGGATGCAGTTTGACATGGAAAGGAGCTGACACACTGGCTAAAGTCATCAAGCATCAAGCCACAAGACGTCACAGTGTGGCTTGGCAAGACAGCCTCCGTTATCGTCATCCTGATTTGGATCGAATGCCTGGACTTCGCAGAATAACAATTTGTAAGAATCCACTCATTAATGACCGTGGAGCAGAACTGATCGCTGAAGCATTGAAAGATGATCTGTGGGTCAAAGCTTTAGACATGCAACAGTGTGGCATAACAACAGAGGGAGCAATTTCTTTTCAACCAGTGTTAAAATTTAACTCCACCATCACAGTGTTGGACCTCAGATTGAATCCACTGATAGAACGCGAAGTATTGGGGTCACTTATGGAGCAGCTCATGATAAACACAGGAGAAAGTGAATTAGAGTATCCATGGTTAGTAATTCGTGAGCCGAAACCTGGAAGAATAAGGCCACGCAAGCGAGGAGGGACGTTCAAACGAAAAACTGGTGCCATGGAACAAATTGGAGGACGTGGCGTTTCCAGAAATGCATCTGTGTTATCGAAAAAATCTTCAGTTGGATTTGTTCCGTGGAGAACTGCAGCCAGGGTTGGAAAGAACAGGCATAAACTGAGAAAGCAAGGTGCACAGGAAGGTGTCTCGCTTAAAAAGGTTAAGACCACAGTTAGTCGTAAACCCCGAGCTACAAGCTCACCATTAGCAACCGAAGAAGATGAAAAAACCTCCATTCGGACAACTGTCACAGAGAGTTCTGTTGATAACCGGGAAAAGTTGAAAGATATGAAGAATTTCTTGCAGTTTGAAATGGAGATGATGAAAAGGCGCCTCGAAGGTGAAAGTCGGGCCCGGGCCACCGCAGATTCACGAATACTCGAGTTGGAAGTCGAAAATAGAAGGTTGCAACAAGAAATACGTCTGCTCAAGACACAACCAATGCTGCCCCCCTCGAAATCGATTCCAGTGAATGGCGGCTTGTTAAGGACAGGGTTTGTTGTTCCGACGAAGAAGGAAGGAGCGAAAACTATTCTTGAAGATGACCGCGTGCTGGAGAGCATCGAGGCATCATTCAGACAATTTCACGATTTCTTGGATCTTCTGAAAGGCTCCAGATTCAGCGAATTGGCGCATGTTCTTGGTGAAAATAAACCCTTTCCTGAGCACGATAAAGAACTGTCACCCATCAAGGAAGAGTCCACCGACAGCATAGTGAGATGACAAACAGCTTTGTAAATGCCATTTCTTGCTCAATTGGCGAGCACCCTGTCAAGTGTTACTCAGAAGTTGTCTTCGTCAAGGAGACGTGAATTTTGATGGAGCGAAAACTCAAATTCAGTCCAATTCTATTTTAGTTTTATTCAAGACTGTAGGATGAGCCGTACAGTTGACACATTTTTACTTTCTTTTTAAATATCTTGTGCAAAATTTCCGGTTTACAttgtttgttttgttttgttttttgttttttgttttaagttttAAAAGCCATTTTACGTCACCTCAGTAGTCATGTTGGTGTACCAAAAATTAAGAAACAAAGGCGACCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JTW2	Centrosomal protein of 78 kDa OS=Homo sapiens OX=9606 GN=CEP78 PE=1 SV=1
Q6IRU7	Centrosomal protein of 78 kDa OS=Mus musculus OX=10090 GN=Cep78 PE=1 SV=1
A2RRS8	Centrosomal protein of 78 kDa OS=Xenopus tropicalis OX=8364 GN=cep78 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006024 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR026212 all species →	Family	Centrosomal protein of 78kDa	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24110 all species →	CENTROSOMAL PROTEIN OF 78 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aint_s0174.g19.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.