Genomic Location: sc0000192_pilon:142048...148555
NR annotation: XP_029185741.2, 26S proteasome non-ATPase regulatory subunit 6-like [Acropora millepora]
Species Acropora intermedia · all data for this species · gene families
| CDS |
| aint_s0192.g14.t1 |
| Transcript |
| aint_s0192.g14.t1 |
| Protein |
| aint_s0192.g14.t1 |
| UniProt accession | Description |
|---|---|
| Q99JI4 | 26S proteasome non-ATPase regulatory subunit 6 OS=Mus musculus OX=10090 GN=Psmd6 PE=1 SV=1 |
| Q15008 | 26S proteasome non-ATPase regulatory subunit 6 OS=Homo sapiens OX=9606 GN=PSMD6 PE=1 SV=1 |
| Q3T0B2 | 26S proteasome non-ATPase regulatory subunit 6 OS=Bos taurus OX=9913 GN=PSMD6 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005459 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21154 all species → | RPN7_PSMD6_C | 26S proteasome regulatory subunit RPN7/PSMD6 C-terminal helix | Domain | Interproscan |
| PF10602 all species → | RPN7 | 26S proteasome subunit RPN7 | Repeat | Interproscan |
| PF01399 all species → | PCI | PCI domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000717 all species → | Domain | Proteasome component (PCI) domain | Interproscan |
| IPR019585 all species → | Family | 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1 | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR049549 all species → | Domain | 26S proteasome regulatory subunit RPN7/PSMD6, C-terminal helix | Interproscan |
| IPR045135 all species → | Domain | 26S proteasome regulatory subunit Rpn7, N-terminal | Interproscan |
| IPR011990 all species → | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14145 all species → | 26S PROTESOME SUBUNIT 6 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005838 all species → | Cellular Component | proteasome regulatory particle | Interproscan |
| GO:0043161 all species → | Biological Process | proteasome-mediated ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03037 | PSMD6, RPN7; 26S proteasome regulatory subunit N7 | - | Proteasome | ko03051 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora intermedia tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora intermedia, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
