Gene detail

Detailed information of aint_s0193.g41.t1 in Acropora intermedia

Genomic Location: sc0000193_pilon:523547...531552
NR annotation: XP_029189134.2, GTP-binding protein ypt2-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0193.g41.t1

GTATCAATTTGCAAAGTCGCTCTGTCGTTGTCCTTGCACCAGAGTTATGGGAGAAAAAGACTACGAACTAACGTACAAAATTCTTATTCTTGGAGACAGCGGCGTCGGGAAAACTTGCCTGATCTTTAGATTTATAGAGGATATATTTTCAGACTCGTATATCTCGACAATCGGTATTGATTGTAGAAGCAGAATTGTGGACCTAGATGGCAAGAGAGTGAGGCTTCAAATTTGGGATACTGCTGGGCAAGAAAGATTCAGGACACTTACAAGTGCTTACTTTAGAGGGGCTATGGGTATAGTTTTAGTGTATGACATCACAACGGAGGACTCATTCAAAAATATAGCTCAATGGCTGCAAAATATTGAAGAGAATGCTTCACCTAATGTTTGTAAAATTCTGGTTGGGAACAAGTTGGATTGTGAAGATGAAAGAGAAATCGACAAATTCAGGGGATTATCAATGAGTGAAAACGCTGAATTAGAATTTTTCGAAACCAGTGCCCGAACAGGAGAAGGTGTATCAGAAGCATTTATGGCAGTTGCACGGCAGATCAAAGAATTTCAAGACAGAAAGGGAGCGAGGTCGTTAGATGAAGATACTACAATTCCTGTCAATGCATCACATGGATCACCTCAAATGCAGTCCGGTTGTTGTCGCTGACAGATCATGGAGAACACCTAACATCTATTATATTGCATGGCAACCATGTTAAAAATCAGTATGTGGATCAATGGAAAAATATCATAAATACAGGGTATGTTTGATGAAAAAAAGGTAAatcctcagaggaaggacctgtcaagctcactgatgatgtaaaacaaagaaaacaagagactattgaaaattgtcaaacaccagcacaagctaaAAAAACAACGAAAAAACAGTAAGGGTTCTTACACCTAGGTAGCCCTGCCCCCCCCCCCCTTAAAACTAAAAAGTAAAAGAAAGAAATAAACTTCACTTTATTTCATGACTACAGGAGGCCCAATCCTAATGGCACCTGTTAGCAACATCAGTAAAGAGGGTcaggatgggggtattggaatctcaggtgtctgacaaatttttggctatttctcagccaacagttagcttaaataaatctcagttaatttttttctcctcaattttatattcgcctgtggctagtggttccacagccacaatattatgatacaatttatcatcattgagaggacagacgcataaaagactgacgtcaatttgcaaactcgaattgttgggatggaaatagggtcttgtcacgcaacttgtagtataagctttgtaacgcataatgtataatgtaacccaatggtcccgtcactcgttaattcgtgtttaaaatggcctattactgggtaattttctcaagatattcagacaatttaccaatctcagcaaaccgttactcaaagattttcagctatcagttaaaagacacatcgtttctcagctattagttgaaattttgcctgaatctcagctatcagttaagtaaccatccataccctcAGTAAAGTGAACCCTTAAAAGTGAGAGTTACTGAACGAATGCAAAAGCACTAGAATTTTCATGTGATTATCAACTTATAGTATACCCTCAATCTTCTTTTTCTTGTGACCTTCTGGTGCTTCTAAATTCAATTTCATCAATGTTGTGTACGCAATCACGTACCCAGCACTGAGTACGCGGAGATTGGCGATGTCAGCTGCCCACGCGTGACACTTTAGTGTCCTTGTTTTATGACCATTGCAACTGCCACGTATCTCTGATTGGGCACTACTGTCCCTGACTAATCCCCAGGGAATTGTCTGTAAAAAGTGAAATTTCTGCCCCCAGTGTAAATTTTTGATTTTTCAAGAAACAGTACGTGGGTAAGCTTCTTAATAATCAGACTATTGGCGCTTCAGATAAGTTAAGGTGATGAACGTATGTTTGGTTTCACGCTAAGTGTATCACTCTCCACCCctggggcccgtttctcgaacgacccgaaactttccaggtgtcataaatccctttgtaccttcaataagatctcgtttcacgccttaaaacttggcagttattttgcctttcctcatatctgaaacatattaaaagaagaacagcttttcaaggcaagcggatcataatttcaagacttgcttttggggcccgaaaagttaccgggtcttttgagaaaCTACTGTCTGGAGCGGGAGAGGGGAAGGGAAGAAGAGAGATCCTAGGAACGAGGTTGTTTTAACTGACTCCCAGCTTAAATTaatacttgaaagacaaggttagtttgtgaagaaactgtggtgctgcgtctatgggcaaatgaaacactaaaatctttatctttattaaaAATGTCCGTAAATCAGTTATCACATTTTGGAACGAGCACTTTAACCTCCATTTTCCTAGTTTTTGATGAGGATGCTACAGAATAGAGACTTTATGTGAAA

Protein

Uniprot

Uniprot term	Description
Q39433	Ras-related protein RAB1BV OS=Beta vulgaris OX=161934 GN=RAB1BV PE=2 SV=1
P17609	GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ypt2 PE=3 SV=1
P28186	Ras-related protein RABE1c OS=Arabidopsis thaliana OX=3702 GN=RABE1C PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR050305	Family	Small GTPase superfamily, Rab	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980	LD44762P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan