Gene detail

Detailed information of aint_s0212.g37.t1 in Acropora intermedia

Genomic Location: sc0000212_pilon:703655...708990
NR annotation: XP_015763973.1, PREDICTED: uncharacterized protein LOC107342960 [Acropora digitifera]
Species abbreviation AINTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aint_s0212.g37.t1

CTAAGTGCCAACAAAAAAGCAACTCACTGCAAACTATTCTTGGTTGATTTCATCTGCTCCTCACGTCAAGCGGCGCCTGCATCTGTGGTGTCCACACACTCCAGTTCCTCTCTGTGAATTTCTCATTGTATTGCTGCTGGGGTCCTGCTGTCTCTGTTTCTCTAACAGCAGCCTCGATTGTCAAGACGTTCTGACGGAGCTGAAATAAACAAAGATTTCCGAAACGTGGCATCATCCGTGAGGACCTGAACAAATAGCGATGTCAAATATTCTTTATTTGGTTGTCTTCATGGGCTTTTTCTCCACAGCGGCTTCTCAAGTAAATTGTGTGAATAAAATAGAAATCGGTGAAGTTCGAGTGCTAAAATCAGACAGCTGTATTGACATTTGTGGAGATTCTGGCCAAGGAAACGTTTTGACGTATAGATGTGAATCCTCACATGACCAAGAGCTCATTATGTGTGAAGATGGCACAATACGAAATATGAAATCTAACAACTGTTTCTCAGCCGGAACAACGGGAAGTGGAAATGTCATCTCGACTACTTGCGTCTTATTCCCGAAAATACCCGAGTACCAGAAATGGAAATTTAGGAAATCAAAAATTTTCAAGGATAAAGGCGGAATCTTGCAGGAAGCAAGAGAGATCATCAACATGAAATCTGGAAAGTGTCTAGATGTCACAGGAATTGACGGAAATGGCAACATTGGTACATATTCTTGCACCGATGAACAAGACCAGTACTTTTATTTTCGCTCCAGAGGGAAACTACTGGCACATGGAAGGCTTCAGGTCCAGAAGTCAGGTCTTTGTTTAGATGTTTCTGGTGACCAGGGAGGTCGAGGCCTACATGACAATAATGTTCTAATATACGACTGTGAAAAAGCTGCTGACCAATTTTTCAGCTTCTATGAAAATGGAGAACTAGTTAATGATAAGTCCGGATTGTGTCTCGACGTTTCGGGCATGGACGGATCAGGCAATGTTCTTATGTACGAATGTGAAGGAACTTCTGATCAAATGTGGTCACAACCTAGGCAGTACTGCGATGGGGACTATTGCTCCTTTGTGAACAATGCATCAGAAAAGTGCTTGGACGTTTCTGGAGATCAAGCAAGCAGTGGGTCAAACGTGCTGGCTTACGACTGTGAAGGGGCACCAGATCAACGCTTTAAATGGGTGTCTGGGAATTGGGCAACGCCGACTGCTGACTGGAATATGGTAGGCTGCAATCAAAACGGCAAAGTCACTCAAAGAATTTATAATAAAATCCAATATTCAACAAAAGAAAGCAAAACTTCAGCATCTGAGATTACCGCCGCAATTGAAGTTAAAACTCAGTTTGTTGGTGTGTCACTCTCCGGCAGTAAATCATCCTCTCTGTCAAAAGAGTGGGCAAGAAGTCAGTCAGAGACAAAGATGATAACGTTTACCTGTGAAAATTACGATTCTGGTAAGCGGTTTGTCCGAGGATGCATGTGGCAATTGCAAGTGACGACAAAAGAACGACACTCCGAGAACGAGATGACATGGACACCCTTAATCGTCAAGTGCACCAGGAATCTTGAAAAGCCAAAGTGTCCTCCTTTTACACGATGCATTGATGAGGATTGCACACGGTGCGAAGAGATACCTGCAAGTCGAGCAGGTTTAAACAAATGATTTTTGCTAAATCTTAACAAAAAATAAACAGCCGAGTTTAATTTTTACGCGTGGGATGATCTTTTTCATATGATTTTTTGACTGATTTTTAATGATCTATGCGATGTTTCAGCTTGTTTTAAGCCATAGTAACTTGTTAACTTTGTAAAAATTCAAATGAGAAGCATGAAGAAAACTCACCAACGCAGTGTTGTAGTTAGTTCGAATAGTATATGTGCAACACGTAGTAGCAGGTAAATAAATCGCCAGTATTTGTAGATTTAACTGTAATCACATTATATTATTATCAAACTGTCAGTTTCACGTTTTTCTTTTGTGACGTCCATATACATCTGGACTATGAACTTCAGTCATTCAGCAATAAAAAAAGTGAAGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q868M7	Galactose/N-acetylgalactosamine-binding lectin CEL-III OS=Pseudocnus echinatus OX=2592315 GN=cel3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005671 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00652 all species →	Ricin_B_lectin	Ricin-type beta-trefoil lectin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000772 all species →	Domain	Ricin B, lectin domain	Interproscan
IPR035992 all species →	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR028988 all species →	Homologous_superfamily	Hemolytic lectin CEL-III, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11675 all species →	N-ACETYLGALACTOSAMINYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004653 all species →	Molecular Function	polypeptide N-acetylgalactosaminyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for aint_s0212.g37.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.