Gene detail

Detailed information of aint_s0229.g22.t1 in Acropora intermedia

Genomic Location: sc0000229_pilon:294846...320430
NR annotation: XP_029214185.2, AP-5 complex subunit beta-1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0229.g22.t1

CCTGAGAAGTGATAGCACTTCGTGGATGAGTTGGCGAAAGAAGGCAGCTAATTCGATAAGAAGGGGATTTCATAATAATGAATTCATTGGCAAGCTACTGGACCTCAAATGTCGAACAATTCCGTCGTTCACCGGAGTCATTTCTTGCGGCAAGGAACATCACCGCTCACAGTTTTGTGGTGGACATTTTAAAGGTTTTTTGTAATGAAAATCTACCAGAGAATTTAAAACTTCAAATGTTACTAATGCTTCAAGAAAAGGCATCAAGCCTTTTCCTTGAATCAAGAAGTGTTGAATGTGCGGTTTACTCAATAAAGGAGCTGTTTGCTCAGCCTCTGAAAGGCATGCTTGAAGTATATGGAAACCAGACAATAAGTGCAGGTACTACAAAGATTCAAAGATTGGAACAAGCTAGGAAGGACATTCTGGCACAATCATCCACGCAATCACAAATTTACCTCAGTCAGATTCTTGTGACTGGCACTGTCATCCTTGTTACATCAAAAATGGTGGAAACAAATCAAGACATTTTTGTGGATTTTGTTGGGGTCCTTACAGATGTTATAGAGATGGTTAATAACCCTTGCAACTTGCTTGTAAGAAAGAGTGCATGTGAATGTCTGTGGGAATTGGAGATGATGTATCCGGGACTCTTTCAGGCTAAACTGGATCATCTGTATGCTCAGTGTGCAGTTGAGAATAGCCACATTTTTCAGAGCTATATGGTTTTATTTGCAACAGTCCTGCATCATGCCATGGAACACTTGTTACAAGTATCTGCCAATAAGTTAGATGACAACTGTCTGAATAATCTTCTGACAAGTCGTACAGAGCCATTGAAGCCACTGTACTTGCCAAGCGAGGCATTAGAGCAATTTTTACCAGTTACCTACCAGGCAACTGGTTTCAGCTCCAAATCATTAACTCTACCTGGAAATGTAGATACCAAGGAAATCAAAAGAGCTATTTCATTCTTGATGGATAGTATCAGCTTCTTAAACATTGGTGGCATTTTTCACTTAATGTGCCAACTCATGCAATGTGTCAAAATTGCAGGACTCTCACCAAATACATTTAAACCCCAGTTCATTAGCTGGGTGTCAACTACAGATTTGTCTCTTTTCCATATGCTTTTACTTTTAAAGATGAAATTCTTGGATGATTTGTTTTTGGAAGGTGATGAGATGCTGCTTCTTCAAAGAATGCTCTTAATATCAAACCAACCCACCATTCCTCAGGGCCAACGCCTGCTTTGTTATGAATGGCTTATGTTCTTCCCAACTGAAGAGGACATGCCCAGTCTTCAACCAAGATTGCCTCATTGCTTGGAGTATTCACAGTTCAGCTACTTCTATCCATGTGTGTTTGATTCTTTGGATATTACAGTGGACAAACTTAAAATACTGTCTCTCTGCTTGGACCATGAGACCTTAATTGTTCAAGGTTCCTTGGGTGTCCCCTTAATGCAGTGCCTTGCTCCACTCCTCAGCAGAGTGCAGCATGGAATTGGTGGCAGGATAGCAGTGGCCTTCTTCAGAAGTCTGTTCTTGTACTATAAACATCACTGGGATTCAGATCTAGTTCAGCAAATTTACAAACTTGTGTTATCAATTGTAACCAATCATCCTCAGTTTATTCCACACACTGTTGATTTACTCGATGCTGTGGCCATTATTACCCCTAACAGTTCCTTTCCAAATGATGTCCTCAGAAGTCTGAGTGATCATGTTGTTTCACAGTCAGTTGATTCTATTCTTCCCAATCTGACACATCACCTCAAGCTACTGTCTCTTGCTATGAGGGCCACTGATATACCACCTGCTCCAACCATTCGTTTTCTGGTACAAATCCTTGAGAAGTCAGAAATTGCTTGCAATGGCAATTGGAGTGTTGGGAACTGTGTGCTGGCTGTCTGCTATAGTATACTGCTGCATCATCATACAAGTGCTACTGTCACAGATCTTGGCAATTTGCTGCTTCATATCTGTGCAAGTTATCAGGATATTGATATTAGAGACCGTGCAAGGTTTTACTACTGTTTGCTCACCAATGTATCAAACAAAAAGTGCACAAAAATACTAGCCACGGAAACGCCTAAACAGGGACTTCCTCAAGCCATCGCAGATGAGATTACAACCAGTACTTTTCCAGTGCCACCACCAGTCAAAGTCGTCAGAAGACCGTTTATCAAACTTACAAGAGTCACTGGATTCACAAGAGGAGGTTCCTTGACTGATATAAAGGCCTCAACATTTTGTTATCCGAAAAAATATCCAGATTCTTCAGGGCTTTTGGATCAGTACCTTAACATGATTGAAACGCTGTACAGCAGAGAAATATCTATCGATTACTACGTTCACTTTACTTACTCTCCATCACTTTCTACACCTAGAATTATCTATGCTTTAGTTCTAAAATTTTTCTCTGAAAGAAGATACAGAAAAGTTGACGATATCCATGTTTCGTTCTTATCAGCCGCCAAGTCCACCGTACCATCAGAAGGTTGTTGTCAGATTACGGTCAGCTTCTGTCCTCTTGATCCAGTGCCTGTAAATGTTCAAGTCAGGGCAATTTTCTGTGACGAAAACGGAATGACATGCGCGATGGACTTAGATCAGTTATCGGTGAACTTTTGCGATTTGTTTCATCCTCTTCGCATTCCTGATAATTTTAAGACGAATCCACCGTTAGTCAGTAAGGGGGAGCTTTTCGCTGTCTTATGGGATTACATGACGCAGGTCGAACGAACAAGTGCAAACCTCACAGGGACTGGAGCCGAGTCTATCTTCTGTCTCTCTGTTGAATGGAGCAAAATGGGAGGGATCCTTGAAGAACATTTGCTGGCTTTTGTAACGAGCGCTTCAGATGATGAAGTTCGACTGGGAATTTTCCTACCGCCTCTTCAGCATCTGCTATTAAAGTTTCGTCCTCTTAACCAAACAACTGTGGTATCCATCGCATCAGATGACTGGCGCTTGCTGCAGCTGATAGAGTCGTACCTACTACAGTTCGAACAAACTGCCGCACAGTAGTTAGTAAGCCGCAAAGCAGTGATTCTGAACAGTTGCAAACACATTGTTACAGCTTAGATGCACTGCAGATGACACGTACTATTTCGAAATAGGAGTCCGAACTGAAACCATGGCGAATCACAGAATGACGCTTGTGTATATCATTAGCCGATTATCAGCTCGTTTCCATCCCTCCCGCACTAATACTGCTGTTTTTACTTAAAACACGACCAAAAAGGGGACGTTTGATTGTGCTACGGTTAGGATAGAGACGCTGTCACGAAATCGTTGCACAACCAGGCTTAACTCTTCCCATAAACAAAATAAACGCCTTAATGGTAAATTAGGGATATGGATAAAGGCAATTGATGTTGCAGGAATGGAGATACGAGGAGACGAAGGTTCACTTAACGCGGGGAGATCAGTGAAAAAAATTTCAAAACATGCCTTAAATTAACGATCATGTTAGTCGAGTAAATTTTTCAGTGAAGACAACACGAATCCAAGAAACGGATAATCTAAAATATAACGCCTATCTGATTTTTTTACGTTTCTAGCCTGGGATTTATTAATTTTTCTATAGCAGTATAAGGGTAGTCATTTCAGTTGAGACAAAATGTGGCGCCTCGCGTTTTCTCAG

Protein

Uniprot

Uniprot term	Description
F6S215	AP-5 complex subunit beta-1 OS=Xenopus tropicalis OX=8364 GN=ap5b1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21590	AP5B1_C	AP5B1, C-terminal	Domain	Interproscan
PF21589	AP5B1_barrel	AP-5 complex subunit beta-1, beta-barrel	Domain	Interproscan
PF21588	AP5B1_middle	AP5B1, middle domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR048981	Domain	AP5B1, C-terminal domain	Interproscan
IPR048980	Domain	AP-5 complex subunit beta-1, beta-barrel domain	Interproscan
IPR048979	Domain	AP5B1, middle domain	Interproscan
IPR038741	Family	AP-5 complex subunit beta-1	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34033	AP-5 COMPLEX SUBUNIT BETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0016197	Biological Process	endosomal transport	Interproscan
GO:0030119	Cellular Component	AP-type membrane coat adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19022	AP5B1; AP-5 complex subunit beta-1	-	DNA repair and recombination proteins	ko03400	deepkoala