Gene detail

Detailed information of aint_s0329.g19.t2 in Acropora intermedia

Genomic Location: sc0000329_pilon:219676...242038
NR annotation: XP_029202673.2, thioredoxin domain-containing protein 3 homolog isoform X1 [Acropora millepora]
Species Acropora intermedia · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aint_s0329.g19.t2

ATGGCGTACATGAAGAAGAACCCAGATGCACTAAAACCATTACAGGTTGAAATTAAAACTCAAGAACAGTGGGATGAGCTGTTAACAAAAGAGGGATTGATAGTTGTGGATACTTATGCCGCCTGGTGTGGACCTTGTAAAGCCATTGTCAGTTCCTTTAAGCGACTAAAGAATGAACTTGGAGATGACCTCCTTGTGTTTGCTACAGCTGAAAGTGATTCCATTGATTCTTTGGAGGCGTACAGAATGAAGAGCCAGCCAACTTTCCTTTTTTATGCTGGAGGCATTCTTATCAATGTTTTAAGGGGATGTAACTGCCCGTTGTTGATCAAGACTATTCGCAGTGAGCTGGAGAAAGAGCACAAAGTCATCAACGGGACAAGTCAAAGAGTTGCGTTTGTTGATCAAGAAGCTTTGAAGGAGCCAGTAATGgatgaacaaaaagatgagaaaatggaagaagaggaagaagaagaagaaTTAGTGGAGTTACCCAAGCAGGTCACTGTAGCTATCATCAAACCTGATGCTGTCAAAGCTGGACTTGTCGATGAAATCATACAGAAGGTTGAAGATGCTGGAATGGAAGTTTTGAAAAAGGAAGAAAAGGTCCTGTCAAAAGAGGAGGCTGCAGAATTTTACAAGCAGCATGAAGGATCTGAACACTTTGATCAACTGGTTGAATTCATGTCAAGTGGTCCTTGTATGACTCTTCTGCTGAGCAAAGCAGGGGACACCCCAGATGCAGGAGACGGTGCCATTGATTATTTCCGTGATCTGATTGGACCAAAAGATGTCAATGTTGCGAAGGAGGAAGCTCCTGCAAGCTTGAGAGCTCTTTATGGTACTGACACAGTGATGAATGCAGTCCATGGCTGTGACTCAGCTGAAAGTGCAGCTAGAGAGCTTGCTTTCTTTTATCCTGACTTTGTGGCACCTACAATAGTTCAAAGAAGGAAAAAGAAGCGTCTGCAGAGAACACTTGCCCTTATCAGACCAGATGCATTGAAGACTCGCAAAGATTCCATTCTGAAAAAGATTGAAGAGGCAGGGTTTACCATCGCTATGTCAAAAGAAATGACATTATCAAAGGAACAAGCTGAAGAGTTTTACGCTGAGCATAAGGATGCAGAGTTCTTTGAGACCTTGGTTACCAACATGACCAGTGGACCAATGATGGCTTTATGTCTGGCCCGTGAAGATGCTGTGGAGGGTTGGCGGGAATTACTTGGACCCAAAGATATCTCGGAAGCTGTAGACCAGGCCCCAGAAAGCTTACGGCAGCAGTTCCATGTAGAAGAGAGTCCCATTAATCCCTTGCATGGATCAGATTCAACTGTTGCCGCAGAAAAGGAAATTCGACAGTTGTTCCCTGTTCAGTCGACATTAGCAGTTATTAAACCTGAAATGGAACCAGATAAGAGAGATGATGTTATTCAGCGAATCAAAGAAGCTGGTTTCAAGATTCAGTTTGAAAAGGAGGTGACACTGACTAAAGAACTAGCATCTCAGTTCTACCATGAACATGAAGGGAAAGACTTCTTTGATGGACTTACAGATCACATGGCCAGTGGACCAACGTTATTTATGGTGCTTACAAGAGAGGATGCTGTCACTGGCTGGAGAGCAATGATGGGCCCCACAGATCCACAGCAAGCTTTAGAGGTTGCACCAAACTCGCTTCGTGCACAGTTTGGCACAGATACAATGAAGAATGCTGTGCATGGCAGTTCCACTGTGGAGAAGGCTGAGAAGGTTATTAAAGAGTTCCTACCTGAAGTTGAAATTTTGCCAGATGGGACAGTTCGAGTGCCAAAAGATGAAGCCCCTGAGCCTGATAAGGACAAGAACGAGCAGGAGGATATACAAAGAATATCCGAGCAATTTAGTGAGCCTTTGGGAATGGAAGATGGCAGCATCCCTGATGATGCAATCAAAGCATCATCTGAACTTGATGATCAGCACAGCGCATCAAGAGCTCGCCTGAATGCCAAGCCTGCTGAAGAAAAGATGGGAGCTTGGGTTCCACTGGAGAGTGATGAAAATCAGTGGCTTCAAGTGGATCTTGGGAAGGTGACAAGGCTCACAAAGATAGCTTTGCAAGGAGAAGCTGGCGAAAGCTCACGGCACGTCAAGGAGTTCGCTGTCTCCTGCAGTCTTGATGGGGAAGGGTTTTTGCCGTACAGAGAGGACAATGCTGAAAAGGTCTTTGAAGGAAGTACAGATCAAGAAACGGTTGTCACTACCAGCCTTAAAAACCCAGTAATAACTCAGTATGTAAAAATGCATCCCAAAACCTGGAATGAAGGCATTGCAATGAGAACTGAGTTTTATGGATGCAGTGCAGATACGTACAGTGAACCTTTGGGAATGGAAAATGGTAACATCCCTAATGATGCAATCAAGGCATCAACTGAACTTGATGATCAGCATAGTGCATCAAGAGCTCGCCTGAATGCCAAGCCTGATGGAGAAAAGATGGGAGCCTGGGTTCCACTGGAGAGTGATGAAAACCAGTGGCTCCAGGTGGATCTTGGGAAGGTTGCAGAGATAACAAAAGTTAGCACCCAGGGGGGTGGTGAAGAGTCAGAACAGCGTGTTGTTAGCTTTGTCTTGGCATTCAGCGAAGATCAAGAAAACTTTCTTGATTATCAAGAAAATGGTGATGTAAAGGTATTTGAAGGTAACACTGATGGTAACACAACAGTGAGTCATTGGTTGGTTCAACCTGTCAGAGCACGCTTCTGCACTGTGAAACCCAAGACATGGAATGAACAGATTGCGTTAAGATTAGAACTTTATGGAAAGGTGGCATTAGATGGCATTCCTGTTGCAGATGAGTTGCCAGAAGAGAATGAAGCCGTGCAACCACAGGACACCCAACATGGAGAAGAAAGTGCGGAGAATCAAGAAGTTCCAGCCCAAGAAGGCACCGAAGCAGTCCCTGAGGCTGAAGAAACTGCTGAGGTTTCTAATGAGGTTAAAGAGAGTCCAAGCGAGGAAGGCAAAGCAGACGAAGGAGATGAAGAGGTTGCTAAAGAAGAAGCGGTCGACGAAAAGGGTACGGACCAAGGGAAGAGTATCGAAGATGCAAATGCTGAAGGCGAACCCGAGGAGGGTCAGGTTGCAGACGAAGTGAAGGAGGGTGTAGACGACAATGCCAAAGAAGGTGAAGGGCAAGATACGGAAGAGGCTAAGGGAGAAAATACAGATGAAGGAAGTAAGCCAGCCGAGGCAGAAAAAGGAGAGCAAAACGCAGAGGAAGAAGGAGCGGAAAAATCCGAGGAGACTACTGAAACTACGGAGGAAGTCAAAGCAGCCGAGGGCGACCAAGCAGATAACAACTGA

Transcript

aint_s0329.g19.t2

TTAGGAAGCGGAAAGTTTCGTGACACAGAAATCGGAAACTGCAGATAGATCACGTTTCGCCAAACCACTGTTTACATTCTTGTATAAAATATTTATAATCTGCCAACGTTTGATAAAGAAGTTATTAACACGAAGCAGTGTGTGGTTGGGTATGAATATGATTAGGTCATCTTGGCGACCATGTTGTAGCTAAGGAGCGAGATCCAAAATGGCGTACATGAAGAAGAACCCAGATGCACTAAAACCATTACAGGTTGAAATTAAAACTCAAGAACAGTGGGATGAGCTGTTAACAAAAGAGGGATTGATAGTTGTGGATACTTATGCCGCCTGGTGTGGACCTTGTAAAGCCATTGTCAGTTCCTTTAAGCGACTAAAGAATGAACTTGGAGATGACCTCCTTGTGTTTGCTACAGCTGAAAGTGATTCCATTGATTCTTTGGAGGCGTACAGAATGAAGAGCCAGCCAACTTTCCTTTTTTATGCTGGAGGCATTCTTATCAATGTTTTAAGGGGATGTAACTGCCCGTTGTTGATCAAGACTATTCGCAGTGAGCTGGAGAAAGAGCACAAAGTCATCAACGGGACAAGTCAAAGAGTTGCGTTTGTTGATCAAGAAGCTTTGAAGGAGCCAGTAATGgatgaacaaaaagatgagaaaatggaagaagaggaagaagaagaagaaTTAGTGGAGTTACCCAAGCAGGTCACTGTAGCTATCATCAAACCTGATGCTGTCAAAGCTGGACTTGTCGATGAAATCATACAGAAGGTTGAAGATGCTGGAATGGAAGTTTTGAAAAAGGAAGAAAAGGTCCTGTCAAAAGAGGAGGCTGCAGAATTTTACAAGCAGCATGAAGGATCTGAACACTTTGATCAACTGGTTGAATTCATGTCAAGTGGTCCTTGTATGACTCTTCTGCTGAGCAAAGCAGGGGACACCCCAGATGCAGGAGACGGTGCCATTGATTATTTCCGTGATCTGATTGGACCAAAAGATGTCAATGTTGCGAAGGAGGAAGCTCCTGCAAGCTTGAGAGCTCTTTATGGTACTGACACAGTGATGAATGCAGTCCATGGCTGTGACTCAGCTGAAAGTGCAGCTAGAGAGCTTGCTTTCTTTTATCCTGACTTTGTGGCACCTACAATAGTTCAAAGAAGGAAAAAGAAGCGTCTGCAGAGAACACTTGCCCTTATCAGACCAGATGCATTGAAGACTCGCAAAGATTCCATTCTGAAAAAGATTGAAGAGGCAGGGTTTACCATCGCTATGTCAAAAGAAATGACATTATCAAAGGAACAAGCTGAAGAGTTTTACGCTGAGCATAAGGATGCAGAGTTCTTTGAGACCTTGGTTACCAACATGACCAGTGGACCAATGATGGCTTTATGTCTGGCCCGTGAAGATGCTGTGGAGGGTTGGCGGGAATTACTTGGACCCAAAGATATCTCGGAAGCTGTAGACCAGGCCCCAGAAAGCTTACGGCAGCAGTTCCATGTAGAAGAGAGTCCCATTAATCCCTTGCATGGATCAGATTCAACTGTTGCCGCAGAAAAGGAAATTCGACAGTTGTTCCCTGTTCAGTCGACATTAGCAGTTATTAAACCTGAAATGGAACCAGATAAGAGAGATGATGTTATTCAGCGAATCAAAGAAGCTGGTTTCAAGATTCAGTTTGAAAAGGAGGTGACACTGACTAAAGAACTAGCATCTCAGTTCTACCATGAACATGAAGGGAAAGACTTCTTTGATGGACTTACAGATCACATGGCCAGTGGACCAACGTTATTTATGGTGCTTACAAGAGAGGATGCTGTCACTGGCTGGAGAGCAATGATGGGCCCCACAGATCCACAGCAAGCTTTAGAGGTTGCACCAAACTCGCTTCGTGCACAGTTTGGCACAGATACAATGAAGAATGCTGTGCATGGCAGTTCCACTGTGGAGAAGGCTGAGAAGGTTATTAAAGAGTTCCTACCTGAAGTTGAAATTTTGCCAGATGGGACAGTTCGAGTGCCAAAAGATGAAGCCCCTGAGCCTGATAAGGACAAGAACGAGCAGGAGGATATACAAAGAATATCCGAGCAATTTAGTGAGCCTTTGGGAATGGAAGATGGCAGCATCCCTGATGATGCAATCAAAGCATCATCTGAACTTGATGATCAGCACAGCGCATCAAGAGCTCGCCTGAATGCCAAGCCTGCTGAAGAAAAGATGGGAGCTTGGGTTCCACTGGAGAGTGATGAAAATCAGTGGCTTCAAGTGGATCTTGGGAAGGTGACAAGGCTCACAAAGATAGCTTTGCAAGGAGAAGCTGGCGAAAGCTCACGGCACGTCAAGGAGTTCGCTGTCTCCTGCAGTCTTGATGGGGAAGGGTTTTTGCCGTACAGAGAGGACAATGCTGAAAAGGTCTTTGAAGGAAGTACAGATCAAGAAACGGTTGTCACTACCAGCCTTAAAAACCCAGTAATAACTCAGTATGTAAAAATGCATCCCAAAACCTGGAATGAAGGCATTGCAATGAGAACTGAGTTTTATGGATGCAGTGCAGATACGTACAGTGAACCTTTGGGAATGGAAAATGGTAACATCCCTAATGATGCAATCAAGGCATCAACTGAACTTGATGATCAGCATAGTGCATCAAGAGCTCGCCTGAATGCCAAGCCTGATGGAGAAAAGATGGGAGCCTGGGTTCCACTGGAGAGTGATGAAAACCAGTGGCTCCAGGTGGATCTTGGGAAGGTTGCAGAGATAACAAAAGTTAGCACCCAGGGGGGTGGTGAAGAGTCAGAACAGCGTGTTGTTAGCTTTGTCTTGGCATTCAGCGAAGATCAAGAAAACTTTCTTGATTATCAAGAAAATGGTGATGTAAAGGTATTTGAAGGTAACACTGATGGTAACACAACAGTGAGTCATTGGTTGGTTCAACCTGTCAGAGCACGCTTCTGCACTGTGAAACCCAAGACATGGAATGAACAGATTGCGTTAAGATTAGAACTTTATGGAAAGGTGGCATTAGATGGCATTCCTGTTGCAGATGAGTTGCCAGAAGAGAATGAAGCCGTGCAACCACAGGACACCCAACATGGAGAAGAAAGTGCGGAGAATCAAGAAGTTCCAGCCCAAGAAGGCACCGAAGCAGTCCCTGAGGCTGAAGAAACTGCTGAGGTTTCTAATGAGGTTAAAGAGAGTCCAAGCGAGGAAGGCAAAGCAGACGAAGGAGATGAAGAGGTTGCTAAAGAAGAAGCGGTCGACGAAAAGGGTACGGACCAAGGGAAGAGTATCGAAGATGCAAATGCTGAAGGCGAACCCGAGGAGGGTCAGGTTGCAGACGAAGTGAAGGAGGGTGTAGACGACAATGCCAAAGAAGGTGAAGGGCAAGATACGGAAGAGGCTAAGGGAGAAAATACAGATGAAGGAAGTAAGCCAGCCGAGGCAGAAAAAGGAGAGCAAAACGCAGAGGAAGAAGGAGCGGAAAAATCCGAGGAGACTACTGAAACTACGGAGGAAGTCAAAGCAGCCGAGGGCGACCAAGCAGATAACAACTGATTTTTGAACAGCTGTGTTTCTCACTTGTCAAGATGGTGGTTCATTACCTTTAAACAGTGGTCGAGCCTGTGGGCCGACGAAACATTTAGACATGTCATTTTCCATTTCTCCACCAAAAAATATGTATATAGAGCATTTCTTTCGAAAATGGTGTTGTATATAGTTTATTTAATAAACTCACATGAAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95YJ5	Thioredoxin domain-containing protein 3 homolog OS=Ciona intestinalis OX=7719 GN=CiIC3 PE=2 SV=1
P90666	Thioredoxin domain-containing protein 3 homolog OS=Heliocidaris crassispina OX=1043166 GN=NME8 PE=1 SV=1
Q6IRC5	Thioredoxin domain-containing protein 6 OS=Xenopus laevis OX=8355 GN=nme9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002441 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR051766 all species →	Family	Thioredoxin domain-containing protein	Interproscan
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR001564 all species →	Family	Nucleoside diphosphate kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46135 all species →	NME/NM23 FAMILY MEMBER 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0006183 all species →	Biological Process	GTP biosynthetic process	Interproscan
GO:0006228 all species →	Biological Process	UTP biosynthetic process	Interproscan
GO:0006241 all species →	Biological Process	CTP biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19868	NME8, TXNDC3; thioredoxin domain-containing protein 3	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora intermedia tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora intermedia, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →