Genomic Location: sc0000397_pilon:253606...266310
NR annotation: XP_029206472.2, LOW QUALITY PROTEIN: AP-4 complex subunit mu-like [Acropora millepora]
Species Acropora intermedia · all data for this species · gene families
| CDS |
| aint_s0397.g18.t1 |
| Transcript |
| aint_s0397.g18.t1 |
| Protein |
| aint_s0397.g18.t1 |
| UniProt accession | Description |
|---|---|
| Q9SB50 | AP-4 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP4M PE=2 SV=1 |
| Q29RY8 | AP-4 complex subunit mu-1 OS=Bos taurus OX=9913 GN=AP4M1 PE=2 SV=1 |
| Q9JKC7 | AP-4 complex subunit mu-1 OS=Mus musculus OX=10090 GN=Ap4m1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005984 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00928 all species → | Adap_comp_sub | Adaptor complexes medium subunit family | Family | Interproscan |
| PF01217 all species → | Clat_adaptor_s | Clathrin adaptor complex small chain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001392 all species → | Family | Clathrin adaptor, mu subunit | Interproscan |
| IPR036168 all species → | Homologous_superfamily | AP-2 complex subunit mu, C-terminal superfamily | Interproscan |
| IPR028565 all species → | Domain | Mu homology domain | Interproscan |
| IPR050431 all species → | Family | Adaptor complexes medium subunit | Interproscan |
| IPR022775 all species → | Domain | AP complex, mu/sigma subunit | Interproscan |
| IPR011012 all species → | Homologous_superfamily | Longin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10529 all species → | AP COMPLEX SUBUNIT MU | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006886 all species → | Biological Process | intracellular protein transport | Interproscan |
| GO:0016192 all species → | Biological Process | vesicle-mediated transport | Interproscan |
| GO:0030131 all species → | Cellular Component | clathrin adaptor complex | Interproscan |
| GO:0005802 all species → | Cellular Component | trans-Golgi network | Interproscan |
| GO:0006605 all species → | Biological Process | protein targeting | Interproscan |
| GO:0031410 all species → | Cellular Component | cytoplasmic vesicle | Interproscan |
| GO:0090160 all species → | Biological Process | Golgi to lysosome transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12402 | AP4M1; AP-4 complex subunit mu-1 | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora intermedia tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora intermedia, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
