Gene detail

Detailed information of aint_s0425.g6.t1 in Acropora intermedia

Genomic Location: sc0000425_pilon:213625...225455
NR annotation: CAB4020330.1, Retrovirus-related Pol poly from transposon TNT 1-94 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0425.g6.t1

TTGAGAAGCAATTTTTCGCCCATGTTATTAACAACATGATTTTCTTTTAGTTTCCTGGAAATACTGTACACAAGACCTTGTTTGGGATTTACTAGCTGGAAAAACAAGGCAAAAGCTGCAAGACTTTTTTTGAGTGTAACCATGAAATACACAAAGATTTTGTGAAGGATTTTGGAAGAAAGTGGAAACTTACAGAGCATATTAGCAGTTGCGCGAAATGAATGAGGAAATCTCTTCGAAGAAATTCGCCACCGTGGTTTTAGGTAGTTTACCCGAGTCATACGATAATTTCCTGACAAGTTTAAACGCAAGAAACGCCGATGATCTCGACTGGGAGAATGTCAAAGGATTATTGATTGAAGAATATATGAAACAGGCGGAAAAGAATGAGAAAGAAAAATCGGCCGACAATGCGCTTTTCGTCAACAGAGGAAGAAATTTCAACCGAGGAAGACATCAAGCACGTGGTGGAAGCCGTGGCGCGAATAGCGCTCGTGGTGCACGTTTTCCGAATTTCAATCCCACTAAAGGTTCTCAACCTTACTCCGATGGACGAGAAAAACACAAAGGAATCACATGCATTAAATGTAACCAGGATGGTCATATTGTGAAGAACTGTCCGTACAATAACAGACAGTATAACAACAGAAGAGAAAGTTCAAATATGGCCGAACTCGAAGGAGTTGCACTGATTTCAAGTACAATGAATCAATCAGATGAGTGGTTCATTGACTCGGCAGCTACAAAGCATATGACAAATGACAGAAGTATTTTAAAGAATTATGTCCAGTACGATCAACCGAAGGACATTTACCTTGGAGACAGCACAGTGATTCATGCTCTTGGCGAAGGGAAGGTAAGACTTCCTACAGTGTACAATACCTGTGATGTTGTCCTTGACTTGCTTAAAGTATTGTTTGTACCAAAGTTGACCAAGAACCTACTTTCAGTACCTGCAATGGCATTAATGGGGGCAGAAATTCGTTTTGACAAGGATAAATGTTTAATACTTAAGGATGGCAAGGAATTTGTCATTGGTTGTTTACTGCATGACAAACTGTACTCTGTCAATACCAAAGAGTATGCTCAAGTTTCAATAGCTGACAGTACTGCATCACCTGCAGTTTGGCACTGTCGATTGGGTCATCTTAACTACACTTATATGAATCAGTTGATGAAGAAAGAAATGGTTGATGGAATGAACTATGCCTCAGGCATCCAAACCCAGAAGGAATGTGAGGCGTGTGTTCTTGGCAAAATGCAGAAGAAACCTTTTCCAAAGCAAAGCCAACATAGGGCAGCCAGACCATATGAGATTGTACACAGTGATGATGGACCCCCCGTAGATATGAAGAGCATATTTCCAGATATGAACGAAGGCAGTGAAAGTGTTCCAGAATTTCCCTTGAATGAAGAACCTGCAGTTCCAGAGCAAGTTAAACCTCCAGCTCTAAAGAATGAAGAACCTGTGATTTCAGAGAATGTTAAACCCTCAGCTCTTAGAGATGTTAAATCTGCCATTCCACAGAATGTTGAAGCAGTGGGAGCACCCAATGAAGAAGCTCCGATTAAGAGAACATATGAAGATAAATTTATGGAAGAAGTTCGAAACCTAGGACCAACCTACCAACAGGCGATTGGATGTCTGACCTATATGTCTACAGCAACAAGGCCAGATGTTGCAGCTGCAGTTGGAGTGTTATCCCAGTATATGTCAAGACCAAGTAAAGAACACTGGATTGGTGTGAAGCATGTTGTGAGATACCTCAAAGGAACTTTGATGTATGGTCTCAAATTTTATGCTCATGAAGAGGAACCAGAATTATTTGGCTACAGTGATGCAGATTGGGCAGGAGATGTTGACACTAGAAGATCAACATCAGGCTATGTGTTTCAGATCGGAAGTAGCACAATCAGTTGTCAAGCAAAAAGCAGGCAACAGTTGCCAAGTCCTCCACTGAAGCTGAATATGTTGCTTTGAGTTCAGCTACACAGGAAGCTGTATGGCTACGCAGTTTAATGGGAGATCTTGGAAGACGACTCGATGCCCCAACTATTATTTATGAAGATAACCAAGGAGCCATTGAACTGGCAAAGAATGCCAAATATCATAACCGAACTAAGCACATTGACATTTGTCATCATTTTGTTCGTGAAAGAGTTATTTCTAATGAAATTCAAGTGATTTA

Protein

Uniprot

Uniprot term	Description
P0CV72	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1
P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
Q9ZT94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13976	gag_pre-integrs	GAG-pre-integrase domain	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052510	Family	Oomycete RxLR Effector	Interproscan
IPR025724	Domain	GAG-pre-integrase domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45895	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan