Gene detail

Detailed information of aint_s0447.g2.t1 in Acropora intermedia

Genomic Location: sc0000447_pilon:39586...59780
NR annotation: XP_020623882.1, uncharacterized protein LOC110061377 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0447.g2.t1

ATGTCAGAAGCTCTTAAAGAGGCAAAGGTCACCCTCCGAAATGGAAAAGCAGCGCTAACCAGGGCTGGAAAATCCCTTCGACACACAATCGAAAGCAAACGTCCAGCTACCGAGGTAAGAGAGTCACTTGCTAAAGTTCAGGAGGCATACGAAAAGCTCACTCAGAAGCATGAAGAATTAACAAAATTGATTGAAGATGATGAAGAATTTGAGAAAGAGGAAATGTGGTTCGAAGAGTGTCAAGAAATGTTTATGAGAGTAGAGGTTCAGGCAAAAGAGTACATCGATGAAACAGCAACAGAAAAGAGTATTTCAGTTAATACGAAAGATGATATTTCAAACGATGTTGTTGAAACTTATCCTGGTTCAGGAAGTCCACCACAAAACAACAGTGGAATGTTAGGAATGCAGTCGGGTGGAAACCAAAGTATTAACACTTCCGTTACTAACCCCTCAGTTGTAAATAATCAAGAAAATAATCAAAATACCGCTGGTggttcctgtggctttcaaatggagagaccaaaaatgcctaaattctccggagacgttagagagtatgcaatatttaaggcagactttaaacacgcgattgaatcgaagtacagcacaatcgatgccatcacttttctgcgcacgtgtctccaaggcaaaccgcttgagttaattaagggaatagggacagattacaccgcagcatgggaatatctggactcgatttatggcgatcctagagttgtctctgacacctttatgcaaaatgtagttaagtttaagccactccgagacggcgaagatgctcgattttgcgacttagtccaccttgtaaaacgatgttacaacacgttgaaagagattggagttccaggtgacatggataatagtcacatgttgtcattaattgaaaagaaaatgtgtgccgatgacagaaaggtctggTCGAGAGTTCTAGAAAAGAACGGCGAGCCGGCGACTCTCCATCATCTGATGACGTGGATGACCACTGAAATGAAGTCGCGTATGCGAGCCACCGCGGCCCTAAGGACAAGTAGTACTCAGCATGCAGTTAATTACGTAACTAAAGGAAATGAAGAAATAAACAGAGTATCAACCTTTAAATGTTGGCTGTGTAAAAGTTCAACTCACTGGCCAGATCAGTGCCTGAAATTTGCTGCGTTAAGTCAAGACGAGCGTTTAAATGCCGCCAAGGAGAACCACGCCTGTTTTAGCTGCCTTAAAAGAGCAGGTAGAGAACATATAATGTCCAACTGTAGCAAAAGAACACAATGTACAGAAACGGTGAACGGCAAGCAATGCAAATACTACCATCATCCTCTGCTGCACAAGAATGCAGACGTCAGAGTAAGCATCTCTTCAGTCCTGGATAGTCAGGATGCATTACTACCGATTATCTCAGCAGAAATGGGAGGGCAGGGATTATACAAGCGTGGAAATGTActtctcgactctggagctcaactaagtctgattcgtatggagacagcagagagtcttgaactagacgggaagaacgtttcaattaccataaccaaaataggcggagaagaggagcaaaggaagacaaaagagtttaaggtccaactaacctctctagttaacaagagaagtttcgttgtgaaggcaatagggattccccgaataagcgatgacattgccggaatttcaagggaggatgctgcaaaaatgtcacttgtgacgaaagagaagacttatcgaggctcaggtccagtggacctacttattggtatagaccacgcccaaatgcacactggcgagacgagacaatcagaacatctggtggccaggaattccccgcttggGATAAAGAAAAAGTTTCTAGCCAAGCTAAAGAAAACTAACGAGTCCCAAATGTGTCAAGATCCGCTATCTGCTCAAGAGTTAGAGGAAAGCAGAAAACACGTTATCAGACACGCAAAGAAAAACCTTAAGAACCGCCTGCTGAACAACGAGTTCAAGATGCTAAGCCCCTTTGTAGATGACGAAGGCATTATCCGAACTTCTCCGAGTTGGAGGACGCGTCGACTAGGCGATGGTATCCTATTAAACGAAGCACCCAGTATTGCTACCTCATGA

Transcript

aint_s0447.g2.t1

ggagaattatggaaagaaattccttctcgcgggtttgagccgttgttgcaatcctgcacaacacaacgactagctggcatactcttgtcatgcacggacgagttcagctcgaatttcgatcgtattcgtaaaaaacaacttcaaaaacctttcaggaactcacctgccccatactaaagtagccaaattgtttttgctgttttgattggatgacgtcacttcccctcccgccccaactttctcagttgttcccggccatatttgaattttgtaatggcgggcggcggaagccagaaattatcgctcaattaatcacacttctcgcggacataaagacttgaagcttaacatgATCGAATAATTGTATTATATCATACCCAATAAAACATTGATTATCCAATACACGGTCGCTTCCGTAAACTTTAATCTCAAGGCGTCGATACTCCAGTTGCCCATTTCATTCGATTTCTTCGCTAACCTGGAGGTCACGTTGAGTTCGACATGTCAGAAGCTCTTAAAGAGGCAAAGGTCACCCTCCGAAATGGAAAAGCAGCGCTAACCAGGGCTGGAAAATCCCTTCGACACACAATCGAAAGCAAACGTCCAGCTACCGAGGTAAGAGAGTCACTTGCTAAAGTTCAGGAGGCATACGAAAAGCTCACTCAGAAGCATGAAGAATTAACAAAATTGATTGAAGATGATGAAGAATTTGAGAAAGAGGAAATGTGGTTCGAAGAGTGTCAAGAAATGTTTATGAGAGTAGAGGTTCAGGCAAAAGAGTACATCGATGAAACAGCAACAGAAAAGAGTATTTCAGTTAATACGAAAGATGATATTTCAAACGATGTTGTTGAAACTTATCCTGGTTCAGGAAGTCCACCACAAAACAACAGTGGAATGTTAGGAATGCAGTCGGGTGGAAACCAAAGTATTAACACTTCCGTTACTAACCCCTCAGTTGTAAATAATCAAGAAAATAATCAAAATACCGCTGGTggttcctgtggctttcaaatggagagaccaaaaatgcctaaattctccggagacgttagagagtatgcaatatttaaggcagactttaaacacgcgattgaatcgaagtacagcacaatcgatgccatcacttttctgcgcacgtgtctccaaggcaaaccgcttgagttaattaagggaatagggacagattacaccgcagcatgggaatatctggactcgatttatggcgatcctagagttgtctctgacacctttatgcaaaatgtagttaagtttaagccactccgagacggcgaagatgctcgattttgcgacttagtccaccttgtaaaacgatgttacaacacgttgaaagagattggagttccaggtgacatggataatagtcacatgttgtcattaattgaaaagaaaatgtgtgccgatgacagaaaggtctggTCGAGAGTTCTAGAAAAGAACGGCGAGCCGGCGACTCTCCATCATCTGATGACGTGGATGACCACTGAAATGAAGTCGCGTATGCGAGCCACCGCGGCCCTAAGGACAAGTAGTACTCAGCATGCAGTTAATTACGTAACTAAAGGAAATGAAGAAATAAACAGAGTATCAACCTTTAAATGTTGGCTGTGTAAAAGTTCAACTCACTGGCCAGATCAGTGCCTGAAATTTGCTGCGTTAAGTCAAGACGAGCGTTTAAATGCCGCCAAGGAGAACCACGCCTGTTTTAGCTGCCTTAAAAGAGCAGGTAGAGAACATATAATGTCCAACTGTAGCAAAAGAACACAATGTACAGAAACGGTGAACGGCAAGCAATGCAAATACTACCATCATCCTCTGCTGCACAAGAATGCAGACGTCAGAGTAAGCATCTCTTCAGTCCTGGATAGTCAGGATGCATTACTACCGATTATCTCAGCAGAAATGGGAGGGCAGGGATTATACAAGCGTGGAAATGTActtctcgactctggagctcaactaagtctgattcgtatggagacagcagagagtcttgaactagacgggaagaacgtttcaattaccataaccaaaataggcggagaagaggagcaaaggaagacaaaagagtttaaggtccaactaacctctctagttaacaagagaagtttcgttgtgaaggcaatagggattccccgaataagcgatgacattgccggaatttcaagggaggatgctgcaaaaatgtcacttgtgacgaaagagaagacttatcgaggctcaggtccagtggacctacttattggtatagaccacgcccaaatgcacactggcgagacgagacaatcagaacatctggtggccaggaattccccgcttggGATAAAGAAAAAGTTTCTAGCCAAGCTAAAGAAAACTAACGAGTCCCAAATGTGTCAAGATCCGCTATCTGCTCAAGAGTTAGAGGAAAGCAGAAAACACGTTATCAGACACGCAAAGAAAAACCTTAAGAACCGCCTGCTGAACAACGAGTTCAAGATGCTAAGCCCCTTTGTAGATGACGAAGGCATTATCCGAACTTCTCCGAGTTGGAGGACGCGTCGACTAGGCGATGGTATCCTATTAAACGAAGCACCCAGTATTGCTACCTCATGACCACGTCATATCACGTCTTATTATACAAGAAGCTCATCGGTGCggacatcccggggtagcgacaatcgtagcaagaacgagaacaaactattggatagtgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03564	DUF1759	Protein of unknown function (DUF1759)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001995	Domain	Peptidase A2A, retrovirus, catalytic	Interproscan
IPR005312	Family	Protein of unknown function DUF1759	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955	RETROTRANSPOSON	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan