Gene detail

Detailed information of aint_s0469.g12.t1 in Acropora intermedia

Genomic Location: sc0000469_pilon:126986...139283
NR annotation: XP_044173119.1, non-structural maintenance of chromosomes element 4 homolog A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aint_s0469.g12.t1

GGGAAAGAAACTGCAAGGCGCGAAAAGTTGATAATTCAACAATCAGCAAGTTCTCCTGTTACCCTTCCCGCATCCATCTTTGAATCCTTATCTGTTCTTGGCTCCGATCGCTATGGGCGAGGACGGTATTAGTGCAGGTGACGACTACGATCCGAAAGCAGATTCCCGCGAAAGGCGACGAATTCGTTATGAATACCGCGAACTCATCGCCGAAACACAAAATAACAGACTAGACTTGACCAGACCCGACTCTACAGGATTACACAAGGCTCTTGATAAAGCTCAGAAATTGTTTAATGAAGTAAAGTCAACTCGGGAGGCAGCACTTGATTCTCGTTTCCTAGTTGTGGCATCTAACCTTGGTAGTCAGCAAGCGCAACAGTTGCAGACTCACTTGGTCACTTTCAGTCATGACACCTTTGTCCAAAAACTGATAACATTCATGGGTGGCAGAAATATTGCAGAAGTTAGTGAAGAGGATGAAGAAGATGAGGCGTCCACAAGAAGGCGGCATCCACCTCCTCAACTTGATTGGAACAAGCTTGGGAAGAAAGCTTGTAGTACCTTTCGGAGAACTCCGAGCATTGATTTTATGTTTGGGCCTTTGTCAATGGAACCTCCTCCACAGCGCAGCAGGCAAGTTCGTGAAAAACCAAAAGACAAACCAGATATTAGTCAGAAAGTCACACCAAGTCAGTTGGAAAAAGTTGAAGCTGAAGGGGAGGCAACCACTAGAGAAGTCGAACGATTACATAGAATCCTCTATGAAAAGACAGTTTCAGAGGGAGAAGTGTATCCAGTTTGTTTATTTGAATTCGTTATCAACCCACATTCATTTTCCAAGACCGTTGAAAACCTCTTCCACTTATCATTTTTAGTGAGGGATGGCCGTGCAGAAATAAGTCTTGATGAAGAAAATGGGCTTCCACTTGTATCGTACTTTGAGATGTCAACCGAAGAAGAAAAAACAGAAAAAAAGCAAGTTGTTGTAAATCTCAATCTTGCACAGTACAAGGAAATAATCAAAACATTTAAGATCACAAAACCCATGATACCTCCTGCCAATGCCAACCGAGTGAATGGGGCAAGCCTTCAGAATCATACAAACCAAGAAGATGGTGTGGATGATGATAATGAATAGGAGGTGTTAGTTTTGTTCATTCATAACTAAACAGCATCTTCACAGGTCAAGAGAGTTGTGTGCGAGATGTTACCCAAACGAAAGGATGGCTAGAACAAAGGCTTTATAGGAATGCAAGACTTAGTTGATTACTGATTTCATAAATGCCACGTAACAGCATGTTTTCTTGTGGTATAATATTTCAGGCTTTGATTTCGAATGACTATTTTTACTGTCAACGGTTCAAAATGTTTTCACATCAACCAAAGCTTTACTTACTTGTCTTTTCTGGGTTATGTTGCGCAAACTAAAATTGAGCCAAATTTGTAATAAATGATGTACAGGTTATTTAAGAGAAGAAAGCTTAAAGGGTATTGTACAGTTTTTAACAGATTGTAAGACTTAAAGATTGAAACAAGAAAGGTTTTAACCATCCATtggaatattacaccaggggacagttgcttgaagcatggttagtgctaactatttttgttttagaagtatcaaaacctatatgtatgtcaacactggttagcgcaaaccatgcttcgagaaactcatgccaggacACTGAGAGACTGCCAAACAGACCTCTTCCCCAACCCACACAATTGTGGAAGGAAAAAGGAAAAAAATAATTGTCTACACAAGTGGAAGCAACAATGATGACATTGATAGGTGAAATAAGTCAAACATTTAGCTTCCATTCTGTGCAAAATTACCAAATTTTATATGGGCATCTAACCACGTATCTTCCTTTCCCTGTATCTAATGCAATAGCTCTCCTAATAGTCTATGTGTTACTGTCAACATTACAAAAGGTAGGCAAGATGAGATAACACTATGTaatatgctatttctgagttcccctccgtctctctttcgaagtgagtctaagtgcgaaacctaggttatgataattagttccaatttcaatatggatgaaaactacttttcatGgatctctttcataatggcgatcaaatttgatattcttttgttttaatgccaataagcctctctagcctcgctgccatgggcaaaattcaaaagaaaatttaaaccaaagtgaggccagcaggtctaattaacataaatacaaagtaataaatatgccaccAAatt

Protein

Uniprot

Uniprot term	Description
Q9NXX6	Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens OX=9606 GN=NSMCE4A PE=1 SV=2
Q4V8G2	EP300-interacting inhibitor of differentiation 3 OS=Rattus norvegicus OX=10116 GN=Eid3 PE=2 SV=2
Q2TBI1	Non-structural maintenance of chromosomes element 4 homolog A OS=Bos taurus OX=9913 GN=NSMCE4A PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15412	Nse4-Nse3_bdg	Binding domain of Nse4/EID3 to Nse3-MAGE	Domain	Interproscan
PF08743	Nse4_C	Nse4 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029225	Domain	Nse4/EID protein, Nse3/MAGE-binding domain	Interproscan
IPR027786	Family	Nse4/EID family	Interproscan
IPR014854	Domain	Non-structural maintenance of chromosome element 4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16140	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0030915	Cellular Component	Smc5-Smc6 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22825	NSMCE4, NSE4; non-structural maintenance of chromosomes element 4	-	DNA repair and recombination proteins	ko03400	deepkoala