Gene detail

Detailed information of aint_s0567.g14.t1 in Acropora intermedia

Genomic Location: sc0000567_pilon:94397...107815
NR annotation: XP_015770454.1, PREDICTED: WD repeat-containing protein 24-like [Acropora digitifera]
Species abbreviation AINTE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aint_s0567.g14.t1

ATGAGTCTTTGGGAACTTGTCGAGAAACCTAGTGCTCGAGAATTACAAGAAATGGCAAAGATCCAAGAAAAAGGGGTTGGTGTCGGGTCTCTTAGTTTCTCTACAATGTTTGTTAATGTTGATGGAGCACTCAGTTCGTTAAGTACCTCTAAAGATGGATCACAAGTGGTGGTGGCTGGCAGAAATGTTTTCAAAGTGATAGGTGTTGAAGAATCTGGATTTGTTGAGAAAACCAACCTTCGCGTAGGAAGAATTAACCTGAACTTCTGTATTACTGATGTACAATGGCATCCAGTTGATGATCACATACTAGCTACTGCTGCTGGAAATGGTACAGTTATCCTTTGGAATTTGAATAAAATTACCAAACAGAAGCAAGAGACAGTATTTTCTGACCACAAGAGGACTGTGAACAGGATTCAGTTCCACCCTTATGAAAAAGATGTTCTTTTGAGTGGATCACAAGATGGAACAATGAAATATTTTGATCTACGCAAGCAGAATGTTGCATTGACTTTCTATGGAAGATCTGATATTATCAGGGATGTTCAGTTCAACCCATTTGATGGACAAACATTTGCTGCTGCCTGTGAGAATGGAAATATTCAGTTGTGGGACAGTCGACAGCCAAGTTCACCAATCATCCAGTTCATGGGACACAATGGACCTACTTTTGCTGTAGATTGGCATCCTGAAGAGAAGAACTGGGTTGCATCCGCAGGAAGAGACACCATGGTTAAGATATGGGATGTCCATGCCAAAACAAGTCTTGTGAATACAATTCAAACAATATCTCCTGTTGGTAGAATCAAGTGGAGACCACAAAGAAAATTTCAGATTGCAAGCTGCTCCCTCATCGTAGATTTTGATATTCATGTATGGGATATCAGAAGACCTTACCTTCCTTATGCTTCCTTCAGTGAACACAAAGATGCTGTCACAGGTATTCTATGGCGGCAGTCCCTCCGTAGTAAAGATCCTTATGTATTTTTTTCATGTGCCAAGGATTCTAGGTTGTATCAACATGTGTTCAGTGATGCACAGCATCCTGCAGATCATGCACCCAGAGTTGGTCTTTCAGTCAGTGTCAATGGGGATATCAGTGTTGCCTTAAGTGACCAGCTACCAAAGGGGTTTACGACACAGAGCATCATACATACAAGACCGCGAAGTGGTCACAATCCTCTTCTCCTACAAAATAAGTTTCAGGATATGGCTGACAGTGTTCGGGAAGTCAAAAGTACACTTGCTGTTCATAGCAGTGGAAAATCCACGAAGGAAGATTGGTTTGGTATCCTAGCACAGAGCTATCAGTTGAGTGGGCACAGTTTTACTGATCTTTGTGAATATAACTGTAATGTGGCTTCGAAACTGTTAATGCATGAACATGCTCAGACATGGTCTGTCCTGAAAACCCTTTACAGTAGCACAGGAGGGACTGGGACTACAAGCACATCATATGCCATGAGTACAGTGAATCCCACGATTCATGCAAATGGAACTGGAAATGCTGAACCTGCTCCTATTGGTGTTAGCCTTCAAAGCAACCTTCAAGGAACCATGACTCTGAAATCTTTATCTGAGACAGGGATGGCACAAAACACAGTAGCAGAAATACAAGATGTTAATGATGACTTGTCATCCTCAAACAGTGAAGGGGGAAATCCAAAGTTTATGAATTTTTCAAGTCGCGATTTCCCGTTTAACGAAGATCAAGACGAAGTTCCATTTTTCTACGACGACTCAATCGCTCTCGGGGATGCTCCAAGAGACTGGACTCTACCCAGCGAAGCGTTCGAGCCTCGGGCAGCACTGGATGACAGACAAACAATTCCGTCTCTTGATCAGGAAGCGGAAAGGCCTGACTCGCCCACTAGTAATGTCGAATCTGAATCACTGAGTGCCATAAATGTGAAGTCCCTCATCGATTCAAGTATTGTCGAATTGCAAGAAACTTACTCGTCCTCCAACAAATCCTTGTCACTTCCTGAGTGGGATTTCACGTCACTTGTTGTGGAAGTGCTTCAGCATTTGGCAGATACGGGAGATGTGCAAATGTGTGTTTCGGCACTGATCGTCCTTGGCGAGAAAATCCGGAGTAGAATAGATGAGCAAACTCAGGAACACTGGATTATATCTTACATTGATTTACTTGGCCGCCTTCAGTTGTGGTCCGTGGCGACACAAATCATTCAACTTTCCAGTTTGCCAACAATCAGCTCATTAAATCAGGCCTCGACGACTGTGCACACAATGTGTGAGCGATGTTCCAAGCCTCTAACTAAGTCTGGTTGGTATTGTGAAAGATGTCGGAGCGTTGTGGCGCCGTGTTCTTTGTGTCATTTGATGGTAAAAGGCCCCTATGTTTGGTGCCAAGGCTGTGGTCATGGGGGTCACCTCATACACATGAAAGAATGGTTCTCTAACCACATCTGGTGCCCAGCGGGCTGTGGGCATATGTGCGAGTACACGTGA

Transcript

aint_s0567.g14.t1

GTATCTCAAGTTACAACAGAAGTGTCCATTTGGCAATCTGTGAAAGGAGGGGTATGGGGAGAGAGAAAGTTTGTGTGGTCTAGACTCCCTCCGATTCTTTTCTTGTGTGGAGACTGAGTTTGCATCTTTCGAAGCGATGTCATGAGTCTTTGGGAACTTGTCGAGAAACCTAGTGCTCGAGAATTACAAGAAATGGCAAAGATCCAAGAAAAAGGGGTTGGTGTCGGGTCTCTTAGTTTCTCTACAATGTTTGTTAATGTTGATGGAGCACTCAGTTCGTTAAGTACCTCTAAAGATGGATCACAAGTGGTGGTGGCTGGCAGAAATGTTTTCAAAGTGATAGGTGTTGAAGAATCTGGATTTGTTGAGAAAACCAACCTTCGCGTAGGAAGAATTAACCTGAACTTCTGTATTACTGATGTACAATGGCATCCAGTTGATGATCACATACTAGCTACTGCTGCTGGAAATGGTACAGTTATCCTTTGGAATTTGAATAAAATTACCAAACAGAAGCAAGAGACAGTATTTTCTGACCACAAGAGGACTGTGAACAGGATTCAGTTCCACCCTTATGAAAAAGATGTTCTTTTGAGTGGATCACAAGATGGAACAATGAAATATTTTGATCTACGCAAGCAGAATGTTGCATTGACTTTCTATGGAAGATCTGATATTATCAGGGATGTTCAGTTCAACCCATTTGATGGACAAACATTTGCTGCTGCCTGTGAGAATGGAAATATTCAGTTGTGGGACAGTCGACAGCCAAGTTCACCAATCATCCAGTTCATGGGACACAATGGACCTACTTTTGCTGTAGATTGGCATCCTGAAGAGAAGAACTGGGTTGCATCCGCAGGAAGAGACACCATGGTTAAGATATGGGATGTCCATGCCAAAACAAGTCTTGTGAATACAATTCAAACAATATCTCCTGTTGGTAGAATCAAGTGGAGACCACAAAGAAAATTTCAGATTGCAAGCTGCTCCCTCATCGTAGATTTTGATATTCATGTATGGGATATCAGAAGACCTTACCTTCCTTATGCTTCCTTCAGTGAACACAAAGATGCTGTCACAGGTATTCTATGGCGGCAGTCCCTCCGTAGTAAAGATCCTTATGTATTTTTTTCATGTGCCAAGGATTCTAGGTTGTATCAACATGTGTTCAGTGATGCACAGCATCCTGCAGATCATGCACCCAGAGTTGGTCTTTCAGTCAGTGTCAATGGGGATATCAGTGTTGCCTTAAGTGACCAGCTACCAAAGGGGTTTACGACACAGAGCATCATACATACAAGACCGCGAAGTGGTCACAATCCTCTTCTCCTACAAAATAAGTTTCAGGATATGGCTGACAGTGTTCGGGAAGTCAAAAGTACACTTGCTGTTCATAGCAGTGGAAAATCCACGAAGGAAGATTGGTTTGGTATCCTAGCACAGAGCTATCAGTTGAGTGGGCACAGTTTTACTGATCTTTGTGAATATAACTGTAATGTGGCTTCGAAACTGTTAATGCATGAACATGCTCAGACATGGTCTGTCCTGAAAACCCTTTACAGTAGCACAGGAGGGACTGGGACTACAAGCACATCATATGCCATGAGTACAGTGAATCCCACGATTCATGCAAATGGAACTGGAAATGCTGAACCTGCTCCTATTGGTGTTAGCCTTCAAAGCAACCTTCAAGGAACCATGACTCTGAAATCTTTATCTGAGACAGGGATGGCACAAAACACAGTAGCAGAAATACAAGATGTTAATGATGACTTGTCATCCTCAAACAGTGAAGGGGGAAATCCAAAGTTTATGAATTTTTCAAGTCGCGATTTCCCGTTTAACGAAGATCAAGACGAAGTTCCATTTTTCTACGACGACTCAATCGCTCTCGGGGATGCTCCAAGAGACTGGACTCTACCCAGCGAAGCGTTCGAGCCTCGGGCAGCACTGGATGACAGACAAACAATTCCGTCTCTTGATCAGGAAGCGGAAAGGCCTGACTCGCCCACTAGTAATGTCGAATCTGAATCACTGAGTGCCATAAATGTGAAGTCCCTCATCGATTCAAGTATTGTCGAATTGCAAGAAACTTACTCGTCCTCCAACAAATCCTTGTCACTTCCTGAGTGGGATTTCACGTCACTTGTTGTGGAAGTGCTTCAGCATTTGGCAGATACGGGAGATGTGCAAATGTGTGTTTCGGCACTGATCGTCCTTGGCGAGAAAATCCGGAGTAGAATAGATGAGCAAACTCAGGAACACTGGATTATATCTTACATTGATTTACTTGGCCGCCTTCAGTTGTGGTCCGTGGCGACACAAATCATTCAACTTTCCAGTTTGCCAACAATCAGCTCATTAAATCAGGCCTCGACGACTGTGCACACAATGTGTGAGCGATGTTCCAAGCCTCTAACTAAGTCTGGTTGGTATTGTGAAAGATGTCGGAGCGTTGTGGCGCCGTGTTCTTTGTGTCATTTGATGGTAAAAGGCCCCTATGTTTGGTGCCAAGGCTGTGGTCATGGGGGTCACCTCATACACATGAAAGAATGGTTCTCTAACCACATCTGGTGCCCAGCGGGCTGTGGGCATATGTGCGAGTACACGTGACCAGTCCAAGCTCAGCCTACAAGACATTAGTGAAGTAAACCATGACTGGGGGAGGAACGTGAGAGTAGAAAACATCGTGTACTGAACCAGCTGCCCGAGAGAATCAACCGAGGGAGCAATCTGCTTTACTGGTCTTCCCTTCATGACTGAATCTTTAGTGTTAAAAAAAAAAAAAAAaaaaacctgtcaatctcactgatgacgtaaaaccacgaaaataaaagagccaagagaccatttaacaataaccaaaccccagcaagagctatcgtaacaagaaaaaaatatcacaggttttcacaccgaagaaaccTTTGAAATAATGGTCCCCTGAAAACCACTTCAAGTTTACTTGCGAAACTTGGCGTGTATGGTTTATAGCTTGAACACGCAGTATGTATAGAATTGCGATATATCAAAAAGTGGACTTGACCTTTTAGGGAATGGCTCTAGTTCAGATATTTTACAAATAGGGTCAGCTTCTATTCCACGCACTAAGAGCACAGGCATACTTTAATTACTTACTCATCATCATCATATAAAAAAAAAATTCACCTTTTTAGAAAGGAAAATCAAACTGCCCACAGAGTACTATAATAATGGATTCTAATTGTTACTAGTAGCAACCTAGTCTTTTATTAAAAATCAATGTGAAAATTAGTTTCAATTTAAACAACCTCAAGTACAATAGCAAATATTAAAGTGCAATGTAAGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZX22	GATOR2 complex protein WDR24 OS=Xenopus laevis OX=8355 GN=wdr24 PE=2 SV=1
Q7ZVL2	GATOR2 complex protein WDR24 OS=Danio rerio OX=7955 GN=wdr24 PE=2 SV=1
Q8CFJ9	GATOR2 complex protein WDR24 OS=Mus musculus OX=10090 GN=Wdr24 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005529 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17120 all species →	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037590 all species →	Family	GATOR2 complex protein WDR24	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR049566 all species →	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46200 all species →	GATOR COMPLEX PROTEIN WDR24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016239 all species →	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700 all species →	Cellular Component	GATOR2 complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20408	WDR24, SEA2; SEA/GATOR complex protein SEA2/WDR24	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.