Gene detail

Detailed information of aint_s0697.g4.t1 in Acropora intermedia

Genomic Location: sc0000697_pilon:46181...76005
NR annotation: XP_029198189.2, low-density lipoprotein receptor-related protein 4-like isoform X3 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0697.g4.t1

ATGGCTATACGTAGGGATATGTTGATTTGGATTTTACTCTGGCTGTTACCCGCATCTGTGTGTAGTCAAAGTGCAGCTTATACTTGTTCTAGAGACCAGTTTGATTGTGGCGATCAAAGATGCATTCCGAATATTTGGAAATGTGACGGAGAAGTAGATTGTGCAAATCATTCTGATGAACGAGGGTGTTCGGAGGCATTCTGTAATCCTGACACAAAGTTCCAGTGTAAGACGACAGAGCGTTGTATTCCTCAGAGATGGCTTTGTGATTCAGATGATGATTGCGGCGATAATTCAGACGAACCTCCAGATTGCACTCAAAGGACTTGCTCTGACGGGGAGCACGCCTGTGGAAATGGCCATTGTATCCCATCAAGATGGGTGTGCGATGGAGACAAGGATTGTAGTGATAACAGCGATGAACAAGGCTGTGGTAACAAGACATGTAAAGCAAGTGAATTCACCTGCTTGAATGGCAAGTGTATCTCACAAGGATGGGTCTGTGATCATGACAATGATTGTGACGATGGCTCAGATGAAAGGCATTGTCCAAATGTAACTTGCAAACCGACACAGTTTACTTGTGTGAACAATGGCCGCTGTATCAAGCAAGAATGGAAATGTGATGGTGACAATGACTGCCAAGATAACTATGATGAGCTTGGATGTCCTACTCGCAGTCCCAGGTGCAAGGAGTCGTACTTTCAGTGCAAGCTTAATTTTCAGTGCATTGACAGCAGCTGGGTTTGTGATGGTGAACCCGACTGTCAAGATGAAACGGATGAGAAAGAATGTGACAAGATCACATGTCCTCCAAATCATTTTACTTGTGCTAATGGAAGATGTATAGCTCAGCAGAAGTGGTGTGATGGTATTGATGATTGCCTTGATGATTCAGATGAACAGAAATGCCCTCTCCCAACCCCCAGTGTTTGCAAAGAGGGCGAGTTTCAATGTGGAGACTCTAATCAGTGTATTAAGAACCAGGATGTGTGTAACAACCACAAAGATTGCCATAATGGAGAAGATGAGCCAGAGTCTTGTGACTGGGGTGATTCTCCCCGAATTGAAAAGTGTGGAATGAACGGTGACCCAAAAACACGCGAAGTCTTGATCAGCAGAAATATCTTGTGGCCAAATGCATTAACAATTGACTACACGGTTGACCGGATCTGGTGGGCAGATGCCAAGCTTCACACCATAGAGTCTTCAGATTTGGATGGCAGGAAGCGTCAGCTTATTCTCTCTGAGGATGTCACCCATCCCTTCGCTCTGACGTTGTTCCAAAACTACATGTACTGGACTGATTGGGAGCATCGTGGTGGTTCAATTAACAAAGCAAACAAGTTTAATGGACAGGAACGATCTGTTGTACAGGAAAACCTGTACTCTCCAATGGATATTCATGTTTACCATCAGCAACGTCAGCCAGCAGGAACAAATCCATGCCGTCCAAAAACCGATTTTGGAAGCTGCAGTCACATCTGCTTGCTGGCACCAAAACACATCTATTCAGATGGCTACTCTTGTCATTGCCCTCCTGGAGTGGAACTCCTTGACGATCACAGAACCTGCAATACAACAGATGCTTTTAACTGTACAAATTCAACTTGTCAAAATGGAGGAACCTGTTATGCAGACAAAGAGAGAAAATCTCTTCCTTCATGCAAATGTCCACCGCAATACTCAGGACATTATTGTGAAATTTCATTGTTCATTGAGAGGAAGACTCACGTAAAAGCACTCAAAAAAGAGGATGTCGGTATTACGGTGGGAATTTCAGTCAGTGTTGTTCTATTTATGATAAATACTGCGGTTTTAATTGCTTGGATGTTTTACAGAAGAATACAAAAAAATAGCCGTAAGTTCTTGATATTTGATAACCCTGTTTACATGAAGACAACAGTATCTGGCAGTTCCCTGGACACAGTAAGCATAGGTCCTGGTGGACATTCACCTGAAAGAGGTCCACGACAATCACTGTTGACTGCGTATTCTAATGAAGTGTATGACAGCAGTTTCTAG

Transcript

aint_s0697.g4.t1

CATGTTCAGATGTGGAAAGTCGCCTCAAATTCTCTGGAATTTTGTTATGGCAAAATTGAAATGCGCTAGAACTCAGAAAGACTGACCAAAACAAGTGTTGCGACAAGCACTTTCGAGAGAGCAGTTTCGGTGGCTCTTAGCGGAAATTAAAATCCAATCCGTTTTGCTTAAGAGGGACTTGAAATATGGCTATACGTAGGGATATGTTGATTTGGATTTTACTCTGGCTGTTACCCGCATCTGTGTGTAGTCAAAGTGCAGCTTATACTTGTTCTAGAGACCAGTTTGATTGTGGCGATCAAAGATGCATTCCGAATATTTGGAAATGTGACGGAGAAGTAGATTGTGCAAATCATTCTGATGAACGAGGGTGTTCGGAGGCATTCTGTAATCCTGACACAAAGTTCCAGTGTAAGACGACAGAGCGTTGTATTCCTCAGAGATGGCTTTGTGATTCAGATGATGATTGCGGCGATAATTCAGACGAACCTCCAGATTGCACTCAAAGGACTTGCTCTGACGGGGAGCACGCCTGTGGAAATGGCCATTGTATCCCATCAAGATGGGTGTGCGATGGAGACAAGGATTGTAGTGATAACAGCGATGAACAAGGCTGTGGTAACAAGACATGTAAAGCAAGTGAATTCACCTGCTTGAATGGCAAGTGTATCTCACAAGGATGGGTCTGTGATCATGACAATGATTGTGACGATGGCTCAGATGAAAGGCATTGTCCAAATGTAACTTGCAAACCGACACAGTTTACTTGTGTGAACAATGGCCGCTGTATCAAGCAAGAATGGAAATGTGATGGTGACAATGACTGCCAAGATAACTATGATGAGCTTGGATGTCCTACTCGCAGTCCCAGGTGCAAGGAGTCGTACTTTCAGTGCAAGCTTAATTTTCAGTGCATTGACAGCAGCTGGGTTTGTGATGGTGAACCCGACTGTCAAGATGAAACGGATGAGAAAGAATGTGACAAGATCACATGTCCTCCAAATCATTTTACTTGTGCTAATGGAAGATGTATAGCTCAGCAGAAGTGGTGTGATGGTATTGATGATTGCCTTGATGATTCAGATGAACAGAAATGCCCTCTCCCAACCCCCAGTGTTTGCAAAGAGGGCGAGTTTCAATGTGGAGACTCTAATCAGTGTATTAAGAACCAGGATGTGTGTAACAACCACAAAGATTGCCATAATGGAGAAGATGAGCCAGAGTCTTGTGACTGGGGTGATTCTCCCCGAATTGAAAAGTGTGGAATGAACGGTGACCCAAAAACACGCGAAGTCTTGATCAGCAGAAATATCTTGTGGCCAAATGCATTAACAATTGACTACACGGTTGACCGGATCTGGTGGGCAGATGCCAAGCTTCACACCATAGAGTCTTCAGATTTGGATGGCAGGAAGCGTCAGCTTATTCTCTCTGAGGATGTCACCCATCCCTTCGCTCTGACGTTGTTCCAAAACTACATGTACTGGACTGATTGGGAGCATCGTGGTGGTTCAATTAACAAAGCAAACAAGTTTAATGGACAGGAACGATCTGTTGTACAGGAAAACCTGTACTCTCCAATGGATATTCATGTTTACCATCAGCAACGTCAGCCAGCAGGAACAAATCCATGCCGTCCAAAAACCGATTTTGGAAGCTGCAGTCACATCTGCTTGCTGGCACCAAAACACATCTATTCAGATGGCTACTCTTGTCATTGCCCTCCTGGAGTGGAACTCCTTGACGATCACAGAACCTGCAATACAACAGATGCTTTTAACTGTACAAATTCAACTTGTCAAAATGGAGGAACCTGTTATGCAGACAAAGAGAGAAAATCTCTTCCTTCATGCAAATGTCCACCGCAATACTCAGGACATTATTGTGAAATTTCATTGTTCATTGAGAGGAAGACTCACGTAAAAGCACTCAAAAAAGAGGATGTCGGTATTACGGTGGGAATTTCAGTCAGTGTTGTTCTATTTATGATAAATACTGCGGTTTTAATTGCTTGGATGTTTTACAGAAGAATACAAAAAAATAGCCGTAAGTTCTTGATATTTGATAACCCTGTTTACATGAAGACAACAGTATCTGGCAGTTCCCTGGACACAGTAAGCATAGGTCCTGGTGGACATTCACCTGAAAGAGGTCCACGACAATCACTGTTGACTGCGTATTCTAATGAAGTGTATGACAGCAGTTTCTAGTACTTATTTTCATCAATGGCTGTCTTGACTGGAGAGTATTGCAACCCTCAATCTCTCCTGTCAGGACAAAAAATTCTACAAATAGGTTATCAAAGTAAAAGGTATATTTTGTAAATATAAAGCTACTGACATTTATTACTTGCCATCCATGAGATGGATTTATTCAGGCAAAAGACTGATCTTACTTACATGTAAGTCATAAAATTCTTTGTATTTGTTTGTCAAGGACGACAACTTAAACAAGTCTTTGCATGTGTGAGAGGGTTTTCTTAATGCAAAGGCATGCAAGAAAAGGAACAATTCCCC

Protein

Uniprot

Uniprot term	Description
P98164	Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens OX=9606 GN=LRP2 PE=1 SV=3
A2ARV4	Low-density lipoprotein receptor-related protein 2 OS=Mus musculus OX=10090 GN=Lrp2 PE=1 SV=1
P98158	Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus OX=10116 GN=Lrp2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR051221	Family	Low-density lipoprotein receptor-related	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22722	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006898	Biological Process	receptor-mediated endocytosis	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0042562	Molecular Function	hormone binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20053	VLDLR; very low-density lipoprotein receptor	-	Membrane trafficking	ko04131	deepkoala