Gene detail

Detailed information of aint_s0808.g1.t1 in Acropora intermedia

Genomic Location: sc0000808_pilon:21076...63083
NR annotation: XP_044167056.1, uncharacterized protein LOC122951085 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aint_s0808.g1.t1

ATGCTTGAGTTTAATTCATTACCAGACTATGTGTTTAATATTGAAGACGAAGTTGAAAAGGAAAATCATCCGGCAGAGCACACCAATAGGGAAACAACAGGATATCAACGCATCACCAATCCTGCAACGCAAGATCACGTTATTGGAGAGCTCAAGGAGTATGCAGCAACAACCCCAGCTGATGCTGATCAGGTATCCATGACAGTGCAGTTTCTAGAAGCCACACAATCCCTGTTTGAATTTGGAATTTTGAGTCATGAAAAGATTTTGGATGCATCCACCTCAGTACTAACTAACATGGAGGATGGATTCCTGTTTTTTGTAGCATGGGCGGACTACTGCTATAGCGAAGGTCATAACCTTGCAACACCTTCACAAACAGTCTTTTTGGCATGGCAGACATGGGATCTTCTTCGACTGATGTACTATGGGTTCAGAGAATTTTGCCAGGAGTTTCTACAAAGGTTTCCCGGTTGTTACATAGTACCGCTGAAGATCAATGGGAGTGGGATAGAAACAATTTTCTCCCAACTGAGGTTCTCAACTACCGGCAACCTATCCGGGAGTAATTATGGCTATGCCCTTTCTGCACTGACCCTTAGAAGGTCTTTACATGGAGATGGCCATGGTAAATCCAAATACCGCAATGCTCGGTTATACGTCATGCAAAGAGATGAATGTATAACATTATGTTTCATCATCAGTCTTCTTAATTTATCGGCCTTTCAGCCTCATCATGGAAGTATTCCCTCCACTATCAAACACCTGGTGTTACTGTACATAAAACAGGGTAAATATGCCGAAGCGGAACCATTGTACAGGCATGCCCTGGAAATACAAGAGGTGACGTTTGGTAAGGCGCATCCAAGTGTTGCCTCTGCTCTGAATAATTTGGCTGTTGTGTTGTGTCTACAGCACAAACAGTCCGAGGCATTACCGCTTTATGAACGCGCGCTACAAATCTATGAGGAAACACTGGGTGGATCGCATCCCCGAGTTGCCGAGACTCTCGTCAACCTCGCCAAGCTGTCGTTAGACCTGTGCAAAGCCGAGGAGGAGGATTGCAGCGAAACACAGTGCCGGGTTTTACTGGTTAGAGACGATCAAGATGCAAAGGACTTTCGGGCGAAGGCTTCCGAGAAAGGTGTTAGGTTGGTTTATATCAACTTGACGGTCATCGTTAACGCGAGCTACGATCCACTGGAATTAGAAGACATGTTCCTCCCTCACAGATGGATCTGGGCCAACACAAGCCATGAGCCGATGCTCTCTTTGCCCGAAGATTACGATATGCTTTCTGCGGGTCTTCTTAATAACCAAGTGAGATGGATAGACGTAAACGTGACAGATCAACCGAGCGGATGTCTGGCTAAATTGAACTCGACATGCCAAAATCTAGCGGTCGGAAGAATGTTGTTAGAAGATCTGACAAAAAGCAGCTCTGGTGACATATTGCACAAAAAGACGCCAGTGGTTTGTGTCGCAGTACTAAACTTTAACACCACAACGACTAACGCTTCCAGTAAACACGACATGGATTATCGTTGCTGTAACGTGGAACCCAACACTGGGCGGACCGTGATTCAGTGCAATGGAAAAATTGACGTTGGACCCTGGGTGAAGACGGTACATAACGTCTTTCTTTTTTTGTCTTGTTTTTTAGCACTGTACGCTCTTGCACTTCCTCTAGCATTACCAGACTATGTTTTTAATCTTGAAGACGAAGTTGAAAAGGAAAATCGCCTAGCAGTGCAGACCAATATAGAAACAACAAGATATCAGTGCATCACCAATGCTTCAAGTGAGGGTAAACACGACAACCAGAGGGGCACTGGTCTGAGCAACACAGAGGATGCAGCCCTGCCCAGTGTGACTTTTACTGCTACTGGTACTGCtaataacaaaaataacaattataataatgataGGATTCAAGAAGAAACCGGCCAAAATACATCGAATTATGTGGCAAATATTTGGGATAAAGAGAAGGAAAGGGAATTCATTCCCGTAGATGATTCAAGTCCAATGAATCTGTCAACTCTTTTACGTGAGGCTGTTCAGAAATTCCCAGATGTACCGTTATCTTTTAACTTAAAATTAGCCGTGGGTGTTTGCGTTTTTCAATGCGTCCTCTATCTTCAAATAGGACTCTATTATACGCTGAAAAAGCCTTCTATCGACGAAATCAGAAAGAAAAGTGTCCAAGTTGATAGTGTATTTGGTGCGAGTGTTATGTTCACGGGAAATTCTGACGAGCGGGCCGACAAACAGCAGCTTGAACTTTTCGCTGGCATCTGGAGGAGCATTGAGGGATGA

Transcript

aint_s0808.g1.t1

TTAAATGTGTCGAATGCTTCTCAATATGGTTCTGGTCGTAGCGTTTTTGTTTTTAGCACTATCTTCTATTATTCTCTATGGAATTGAGTATGAACTTTCGACTTTCACTACAACGATCTCTGTGTTTTGCACTGGTTCAATTCCACTATTTTTTTCAAAAGTACTGACAAATAATAGCAATATCATCGGTTGGGCAAAAATCGAAATGCAAGGAGAAATTGATAACGCGGTCACAGAATACAGAGACAGTAGTAACTTGGAAGCACTATTACAATGAATTAAAGATGCTTGAGTTTAATTCATTACCAGACTATGTGTTTAATATTGAAGACGAAGTTGAAAAGGAAAATCATCCGGCAGAGCACACCAATAGGGAAACAACAGGATATCAACGCATCACCAATCCTGCAACGCAAGATCACGTTATTGGAGAGCTCAAGGAGTATGCAGCAACAACCCCAGCTGATGCTGATCAGGTATCCATGACAGTGCAGTTTCTAGAAGCCACACAATCCCTGTTTGAATTTGGAATTTTGAGTCATGAAAAGATTTTGGATGCATCCACCTCAGTACTAACTAACATGGAGGATGGATTCCTGTTTTTTGTAGCATGGGCGGACTACTGCTATAGCGAAGGTCATAACCTTGCAACACCTTCACAAACAGTCTTTTTGGCATGGCAGACATGGGATCTTCTTCGACTGATGTACTATGGGTTCAGAGAATTTTGCCAGGAGTTTCTACAAAGGTTTCCCGGTTGTTACATAGTACCGCTGAAGATCAATGGGAGTGGGATAGAAACAATTTTCTCCCAACTGAGGTTCTCAACTACCGGCAACCTATCCGGGAGTAATTATGGCTATGCCCTTTCTGCACTGACCCTTAGAAGGTCTTTACATGGAGATGGCCATGGTAAATCCAAATACCGCAATGCTCGGTTATACGTCATGCAAAGAGATGAATGTATAACATTATGTTTCATCATCAGTCTTCTTAATTTATCGGCCTTTCAGCCTCATCATGGAAGTATTCCCTCCACTATCAAACACCTGGTGTTACTGTACATAAAACAGGGTAAATATGCCGAAGCGGAACCATTGTACAGGCATGCCCTGGAAATACAAGAGGTGACGTTTGGTAAGGCGCATCCAAGTGTTGCCTCTGCTCTGAATAATTTGGCTGTTGTGTTGTGTCTACAGCACAAACAGTCCGAGGCATTACCGCTTTATGAACGCGCGCTACAAATCTATGAGGAAACACTGGGTGGATCGCATCCCCGAGTTGCCGAGACTCTCGTCAACCTCGCCAAGCTGTCGTTAGACCTGTGCAAAGCCGAGGAGGAGGATTGCAGCGAAACACAGTGCCGGGTTTTACTGGTTAGAGACGATCAAGATGCAAAGGACTTTCGGGCGAAGGCTTCCGAGAAAGGTGTTAGGTTGGTTTATATCAACTTGACGGTCATCGTTAACGCGAGCTACGATCCACTGGAATTAGAAGACATGTTCCTCCCTCACAGATGGATCTGGGCCAACACAAGCCATGAGCCGATGCTCTCTTTGCCCGAAGATTACGATATGCTTTCTGCGGGTCTTCTTAATAACCAAGTGAGATGGATAGACGTAAACGTGACAGATCAACCGAGCGGATGTCTGGCTAAATTGAACTCGACATGCCAAAATCTAGCGGTCGGAAGAATGTTGTTAGAAGATCTGACAAAAAGCAGCTCTGGTGACATATTGCACAAAAAGACGCCAGTGGTTTGTGTCGCAGTACTAAACTTTAACACCACAACGACTAACGCTTCCAGTAAACACGACATGGATTATCGTTGCTGTAACGTGGAACCCAACACTGGGCGGACCGTGATTCAGTGCAATGGAAAAATTGACGTTGGACCCTGGGTGAAGACGGTACATAACGTCTTTCTTTTTTTGTCTTGTTTTTTAGCACTGTACGCTCTTGCACTTCCTCTAGCATTACCAGACTATGTTTTTAATCTTGAAGACGAAGTTGAAAAGGAAAATCGCCTAGCAGTGCAGACCAATATAGAAACAACAAGATATCAGTGCATCACCAATGCTTCAAGTGAGGGTAAACACGACAACCAGAGGGGCACTGGTCTGAGCAACACAGAGGATGCAGCCCTGCCCAGTGTGACTTTTACTGCTACTGGTACTGCtaataacaaaaataacaattataataatgataGGATTCAAGAAGAAACCGGCCAAAATACATCGAATTATGTGGCAAATATTTGGGATAAAGAGAAGGAAAGGGAATTCATTCCCGTAGATGATTCAAGTCCAATGAATCTGTCAACTCTTTTACGTGAGGCTGTTCAGAAATTCCCAGATGTACCGTTATCTTTTAACTTAAAATTAGCCGTGGGTGTTTGCGTTTTTCAATGCGTCCTCTATCTTCAAATAGGACTCTATTATACGCTGAAAAAGCCTTCTATCGACGAAATCAGAAAGAAAAGTGTCCAAGTTGATAGTGTATTTGGTGCGAGTGTTATGTTCACGGGAAATTCTGACGAGCGGGCCGACAAACAGCAGCTTGAACTTTTCGCTGGCATCTGGAGGAGCATTGAGGGATGAAATACACCGTCATTTACAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR051787	Family	Effector and Ciliary Development-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45641	TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19513	CLEC16A; protein CLEC16A	-	Mitochondrial biogenesis	ko03029	deepkoala